KEGG   Mannheimia haemolytica D171: J450_06030
Entry
J450_06030        CDS       T02747                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
mham  Mannheimia haemolytica D171
Pathway
mham03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:mham00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    J450_06030 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mham03021]
    J450_06030 (rpoB)
   03400 DNA repair and recombination proteins [BR:mham03400]
    J450_06030 (rpoB)
Enzymes [BR:mham01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     J450_06030 (rpoB)
Transcription machinery [BR:mham03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     J450_06030 (rpoB)
DNA repair and recombination proteins [BR:mham03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      J450_06030 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 SPG4 RelB
Other DBs
NCBI-ProteinID: AGQ38694
Position
complement(1259724..1263749)
AA seq 1341 aa
MAYSYSEKKRIRKSFGKRPQVLNVPYLLTIQLDSFEKFIEKDPEGQQGLEAAFRSVFPIV
SNNGATELQYVSYELGEPVFDVRECQIRGTTYAAPLRVKLRLVSYDREAAAGTVKDIKEQ
NVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFARIDRRRKLPATIILRALGYTTEEILNLFFEKIKFEIADNKLLMT
LVPERLRGETASFDIAANGKVYVEMGRRITARHIRALEKDNVTQIEVPVEYIVGKVAAQD
YVDLSSGEVICPANMEISMEMLANLSQAGYNQIEVLFTNDLDHGPYISETLRVDPTYDRL
SALVEIYRMMRPGEPPTKEAAEALFDNMFFSAERYDLSAVGRMKFNRSLEIPEGVGSGIL
SNDDIIGVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRVERAVRERLS
LGDLDGVTPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSVYARTNNYGFLETPFRKVVNGQVT
EEIEYLSAIEESNNIIAQANSNLDENFRFTDTYVTCRQQGESGLFKPEEVQYMDISTQQV
VSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIALDSGVAIVAKR
GGTVQYVDASRIVVKVNEDETIPGEAGIDIYNLIKYTRSNQNTCINQVPCVNLGEPVARG
EILADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQEDRFTTIHIQELSCVA
RDTKLGAEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRAKEIEEMQLCEAKKDL
AEELEILEAGLFTRVRNLLIEGGVKESALDGVAREKWLEQTLEDEAKQNQLEQLAEQHEE
LRKEFERKLEIKRNKIIQGDDLAPGVLKVVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHLGLAARGIGDQIDKMIKQQQEVAK
LREYMQKAYDLGHGSQVVDLSTFSDEEVMRLAQNLRKGLPLATPVFDGAHESEIKGLLEL
GGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGTHYMEPGIPE
SFNVITKEIRALAIDMELDEA
NT seq 4026 nt   +upstreamnt  +downstreamnt
atggcatattcatattccgagaaaaagcgtatccgtaagagctttggcaaacgcccacaa
gttctgaacgtaccttatctattaacaattcagcttgattcttttgaaaaatttatcgaa
aaagatcctgaagggcagcaaggtttagaagcggcattccgttctgttttcccgattgtg
agcaacaatggtgcaacagaattacaatacgtttcttacgaattaggcgagccggtgttt
gacgtgcgtgagtgccaaattcgtggtacaacctacgctgcaccattacgcgtgaaattg
cgtttagtctcttacgatcgtgaagccgcagccggtacggtaaaagacattaaagagcaa
aacgtgtatatgggcgaaatcccattaatgaccgataacggtactttcgtgattaacggc
accgagcgtgttatcgtttctcaattacaccgtagcccaggtgtgttcttcgattctgac
aaaggtaaaacccactcttcgggtaaagtgctttataacgcacgcattatcccttaccgt
ggttcttggttagatttcgagtttgatccgaaagataacttatttgcccgtatcgaccgc
cgtcgtaaattgccggcaaccattattctacgtgcattaggctacaccaccgaagaaatc
ttaaatttattcttcgagaaaattaaatttgaaattgccgataataaattattgatgacg
ttagtgcctgagcgtttaagaggcgagactgcatcatttgatattgcagcaaacggcaaa
gtatatgttgaaatgggtcgccgtattaccgctcgtcatatccgtgcgttagaaaaagac
aatgtgacccaaattgaagtgccggtggaatatattgtcggcaaagtagcggctcaagat
tacgttgatttatcttcaggtgaagtgatttgcccggcgaatatggaaatctcgatggag
atgttggcgaatttatcacaagccggttacaaccagatcgaagtattatttaccaacgat
ttagaccacggtccatatatttctgaaaccttacgtgttgatccaacttacgaccgttta
agtgcgttggttgaaatctatcgtatgatgcgtccgggcgaaccaccaacgaaagaagcg
gcagaagcattattcgataatatgttcttctcggcagagcgttatgatttatcggcagta
ggtcgtatgaaattcaatcgctcgttagaaattccggaaggcgtaggcagcggtatttta
agcaacgatgacatcatcggtgtgatgaaaaaattaatcgaaatccgtaacggtcgtggt
gaagtggatgatatcgaccacttaggtaaccgtcgtatccgcagcgttggtgaaatggca
gaaaaccaattccgcattggtttggtgcgtgtagaacgtgcggtgcgtgagcgtttatct
ttaggcgatttagatggtgtaacaccacaagatttaatcaacgctaaaccgatttcagca
gcagtgaaagagttctttggttcatcacaactttcgcaatttatggaccaaaacaacccg
ctttcagaggtaacacataaacgccgtatctcggcattaggcccgggtggtttaacccgt
gagcgtgccggctttgaagtgcgtgacgtacacccgactcactatggtcgtttatgtcca
atcgaaactcctgaaggcccgaatatcggtttgatcaactcactatcggtgtatgctcgt
actaataactacggtttcttagagactccattccgtaaagtggtgaatggtcaagtaacc
gaagagatcgagtatttatctgcgattgaagaaagcaacaatatcattgcacaggcgaac
tcaaacttagatgagaacttccgttttaccgatacttatgtaacttgccgtcagcaaggc
gaatcgggcttattcaaaccggaagaagttcaatatatggacatctcaacccaacaagtg
gtttctgtggctgcggcgttaattccgttccttgagcacgacgatgcgaaccgtgcgtta
atgggtgcgaacatgcaacgtcaggcagttccaaccttgcgtgcggacaaaccattagtc
ggtaccggtatggaaaaaccaattgctcttgactcaggtgtagcgattgtcgcaaaacgt
ggtggtacggtgcagtatgttgatgcgtcacgcattgtagtgaaagtaaatgaagatgaa
accattccgggcgaagcgggtatcgatatttataacttaatcaaatacacccgttcaaac
caaaacacctgtatcaaccaagtaccttgtgtgaacttgggtgagccggttgctcgtggt
gaaatcttagcggacggtccttcaacagacttaggtgaattggcattaggtcaaaatatc
cgtgtggcatttatgccttggaacggttataacttcgaagactcaatgttagtttctgag
cgtgtggtacaagaagatcgctttaccactatccacattcaagaattatcttgtgtggcg
cgtgataccaaattaggtgcagaagagatcaccgctgatattccaaacgtgggtgaatct
gcattaagcaaattagatgaatcaggtatcgtttacatcggtgcagaagtgaaaggtggc
gacatcttagtaggtaaagtaactcctaaaggtgaaacccaattaacaccggaagaaaaa
ctattgcgtgcgatcttcggtgaaaaagcctctgatgtgaaagattcatcattgcgtgtt
ccaaacggtacttcaggtacggttatcgatgttcaagtatttacccgtgatggcgtagag
aaagataaacgtgcgaaagaaatcgaagagatgcaactgtgtgaagcgaagaaagactta
gcggaagagttggaaatcttagaagccggtttatttactcgtgttcgcaacctattaatt
gaaggtggcgtaaaagaatctgcattagatggcgttgctcgtgaaaaatggttagaacaa
acccttgaagacgaagcgaagcaaaatcagttagaacagttagcggaacagcacgaagag
ttacgcaaagaatttgaacgtaaacttgagatcaaacgcaacaaaattatccaaggcgac
gatttagcaccgggtgtgttaaaagtagtgaaagtttaccttgcggtgaaacgccaaatc
cagccgggtgataagatggcgggtcgtcacggtaacaaaggggttatctcgaaaatcaac
cctgtggaagatatgccatacgatgaaaacggtcagccggttgaaatcgtattgaacccg
ctgggcgtaccgtctcgtatgaacatcggtcagatcttagaaacccacttaggcttagcg
gctcgtggtatcggtgatcagattgataagatgatcaaacagcaacaagaagtggctaaa
ttacgtgaatatatgcaaaaagcctacgatttaggtcacggctcacaagtcgttgattta
agcactttctctgatgaagaagtgatgcgtttagcgcaaaacttacgcaaaggcttaccg
cttgctactccggtattcgatggtgcacacgaaagcgaaatcaaaggcttattagagtta
ggcggcttaccgacttcaggtcagatcacactttatgatggtcgtaccggtgagaaattt
gagcgtccggtaaccgttggttatatgtatatgctcaaattgaaccacttggttgatgat
aaaatgcacgctcgttcaaccggttcttatagccttgttactcaacaaccattgggtggt
aaagctcaattcggtggtcagcgtttcggtgagatggaggtttgggcattagaagcatac
ggtgcggcttatactcttcaagaaatgcttacggtgaaatcggacgatgtgaacggtcgt
acgaagatgtataaaaacattgtagatggtacacattatatggagccgggtatccctgaa
tcctttaacgtaattaccaaagagatccgtgcattagcaattgatatggagctggacgaa
gcgtaa

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