KEGG   Candidatus Beckwithbacteria bacterium GW2011_GWC1_49_16: UY43_C0001G1032
Entry
UY43_C0001G1032   CDS       T04022                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
mib  Candidatus Beckwithbacteria bacterium GW2011_GWC1_49_16
Pathway
mib03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:mib00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    UY43_C0001G1032
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mib03021]
    UY43_C0001G1032
   03400 DNA repair and recombination proteins [BR:mib03400]
    UY43_C0001G1032
Enzymes [BR:mib01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     UY43_C0001G1032
Transcription machinery [BR:mib03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     UY43_C0001G1032
DNA repair and recombination proteins [BR:mib03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      UY43_C0001G1032
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: AKM79746
Position
complement(916183..919518)
AA seq 1111 aa
MSKLTSQAKTKNRIVWGDQPAKLPQLNLIDVQKESYDWFLSLGIKESLESISPIADFTGK
NWQLSFGEHQIGKPKHSPDEAQDKGLSYEVPLRVKAKLTNLQTGDEVEQEVFMGDIPQMT
QIGTFIINGIERAVVNQLVRSPGVFFSGEPDMSTGRMLYAAELRPLRGSWLEFNVTRYNT
ITVKIDRHRKFSATTLLRAMKSLDDEAILKHFAEVDTNQKHPYTLSMLEKDPTKTQEEAL
IEIYQKMRPGEPAILENAKELLHRMFFDPRRYDLGDVGRYKLNRRLRLDIDIQNHVLTAQ
DIIAAIKYLIGLQNGQGRVDDIDSLSNRRVRRVGELVSSTAFRIGLLRLERSIREKMSLA
KADIEVTPSTLVNPRPVIASVSDFFRRNRLSTILDQTNPLSEIDNLRRLSVMGSGGVTRE
RASFSMRDINSSQYGRICPVRSPEGPNIGLVTYLALYARVNKFGFLETPYRKVVKKTTAG
KTKMQVTDEIVYLASDEEENHYITHADIGIDGHAYLTDEWVPARYQGEFIEVSANQIEYI
DVVPRQVVGTSASLIPFIAHDEANRALMGTHMQCQAVPLVKPEAPIIGTGMETEIPQSMN
RIVQALVEGKVIYVDAEKTIVKTSKKDTKKLSQLKSQLPETISISGNDITYQTTKFSRTT
QSTCYSQHPLVEVNDKVKAGQMIIDGPACDEGELALGQNLTIAYMNYEGLGYEDAIIISD
RLVKEDILTSIMINEYEAQIMDTKLGPEELTRDIPNVGETELANLSEEGIVVVGSLVGPN
DILVGKIAPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEGGTVIEVKIFDREKGD
ELDPGVIKKVVVQVAQMRKIVVGDKLAGRHGNKGVISKIVPEADMPYFADGKPVDIIISP
LSVLARMNLGQLLEAQLGWAVQKLDYRVALPVFEPIDEDKVAQELTKAKLPVSGKTVLYD
GRTGEPFDKKVAVGVAYILKLIHMVEDKTHARSTGPYSLVTQQPLGGKAQMGGQRLGEME
VWALESHRAAHTLQEMLTIKSDDVVGRAKAFEAIVKNLDIPEATIPESFRVLVKELSSLG
LNIIPKGATEEAKVDDEPLEAEDNQTDAKSN
NT seq 3336 nt   +upstreamnt  +downstreamnt
atgtctaaactaacctctcaagccaaaactaaaaaccgaatcgtttggggcgaccaaccc
gctaaactccctcaattaaacctcatcgatgttcaaaaagaatcttacgactggttttta
agccttggtatcaaagagtccttggaaagcatttctcctatagctgactttactggtaaa
aattggcagctttctttcggtgaacaccaaattggtaagcccaagcattctcctgacgaa
gcgcaagataaaggccttagctacgaagttcctctaagagtcaaagccaagctcactaac
ctgcagaccggcgacgaggtcgaacaagaagtttttatgggcgacattccccaaatgacc
caaatcggcaccttcattatcaacggtatcgagcgagccgtggtcaatcaactggttaga
tctccgggggtatttttttccggcgagcccgacatgtctacgggcagaatgctttatgcc
gccgagttaagacccctcaggggatcttggctggagtttaacgtcactcgctacaacacc
attaccgtcaaaattgatcgtcaccgcaaattttccgccaccactttgctccgagccatg
aaatcgcttgacgacgaagcaattttaaaacattttgccgaagtcgataccaaccaaaaa
cacccctacactttatctatgctcgaaaaggatcccaccaaaacccaggaagaggcctta
atagaaatttaccaaaaaatgcgtcccggcgagccggcaattttggaaaacgccaaagag
cttctccaccgaatgttttttgatccgcggcgttacgatttgggtgatgttggtcgttat
aagctaaaccgtcgtttacgcctagatattgatattcaaaaccacgttttaaccgctcaa
gatataattgctgccatcaaatacctgatcggtttacaaaatggtcaaggtagagtcgac
gatattgacagcctttcaaaccgtagagtccgtcgcgtaggagagctcgttagctccact
gcttttcgtatcggcctcttgcgtctcgaacgttccattagagaaaaaatgagcctagct
aaggctgatatcgaagtcacccccagtacactagttaatccccggccggtaatcgcatct
gtttccgattttttccgaagaaatcgcctctctactattcttgatcaaaccaatcctcta
tcagagatagataatttaagacgtttgtcagtcatgggctctggcggagttacgcgagaa
agagcctctttttccatgcgcgacatcaactccagccaatatgggcgaatctgccccgtc
cgttcaccagaaggtccgaacattgggctagttacttatctggccctctacgctcgagtt
aataagtttggctttttagaaacgccttaccgcaaagtagtcaaaaaaactaccgctgga
aaaaccaaaatgcaggttaccgatgaaattgtttatctcgcttccgacgaagaggaaaac
cactatattactcacgccgacatcggtatagacggtcacgcttacctcaccgatgaatgg
gttccggctcgctaccagggtgaatttatcgaagtctctgccaatcagatagaatatatc
gacgtcgttcctcgtcaagtagtcggcacttcagcctctctaattccctttattgcccac
gacgaagccaaccgggctctcatgggcactcacatgcaatgtcaagctgttcctcttgtt
aaaccagaggcgcccataattggcacgggtatggagacagaaatccctcagtcgatgaac
cgcattgttcaggccttagtggagggtaaggttatttatgtagacgccgaaaaaacaata
gttaaaacctcgaaaaaagacactaaaaagctctctcaattaaaatctcaacttccagaa
actatttctatttctggcaacgacattacttatcaaactactaaattctcccgcaccacc
cagtccacctgttactctcaacacccactggtcgaagtcaacgataaagttaaagccggt
caaatgatcattgatggacccgcctgtgacgaaggcgagctggccctgggtcaaaacctg
actattgcctatatgaactacgaaggcttaggctacgaagacgccattattatctccgat
cgtctggtcaaagaagacattttaacttcgatcatgatcaacgagtatgaagctcaaatc
atggacacaaagttaggcccagaagaattaaccagagacattcctaatgtcggcgaaaca
gaacttgctaacttgagcgaagaggggatagtcgtcgtcggcagccttgttggtcctaac
gatatcctagttggcaaaattgcccctaaaggcgaaacagaattaacggcagaggaaaga
ttacttcgagccatttttggcgagaaagcccgcgaggtccgcgacacttccttaagagtt
ccccatggggaaggcggtaccgttatcgaagttaaaatttttgatcgagaaaaaggggac
gaactcgaccctggtgtcatcaaaaaagttgtcgtccaagtggcccaaatgagaaaaatc
gttgtcggtgacaaactcgctggccgccatggcaataaaggcgtcatcagcaaaatcgtt
cccgaagctgacatgccttattttgccgatggcaagcccgtggacatcatcatctcgccc
ttatcggttctagcccggatgaatctcggccaacttctagaggcacaattaggttgggca
gtgcaaaaacttgactaccgagttgccttgcccgtttttgaacccatcgacgaagataaa
gttgctcaggagcttactaaagccaagcttccggttagcggcaaaacagttctttacgat
ggtcgtactggggagcccttcgataaaaaagtcgccgtgggtgtcgcctacattttaaaa
ctcatccacatggtcgaggacaaaacccacgctcgttctaccgggccctactcgctcgtc
acccagcaacccctaggcggcaaggctcagatgggcgggcaacgtctgggcgaaatggaa
gtttgggcgcttgagtcacaccgtgccgcccacacccttcaagaaatgcttaccatcaaa
tccgacgacgtcgtcggccgagccaaagcctttgaagctatcgtcaaaaacctcgacatc
cccgaagccaccatccccgaatcctttagggttttggttaaagaactctcaagccttggg
ttaaatatcattcccaagggcgccaccgaagaggctaaagtagacgacgaacctctcgag
gcagaagacaaccagacagatgcaaaatctaactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (31)   

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