KEGG   Microbulbifer aggregans: AUP74_02401
Entry
AUP74_02401       CDS       T04560                                 
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
micc  Microbulbifer aggregans
Pathway
micc03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:micc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    AUP74_02401 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:micc03400]
    AUP74_02401 (mfd)
Enzymes [BR:micc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     AUP74_02401 (mfd)
DNA repair and recombination proteins [BR:micc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      AUP74_02401 (mfd)
SSDB
Motif
Pfam: TRCF UvrB_inter DEAD MFD_D3 Helicase_C CarD_TRCF_RID ResIII AAA_30 UB2H ERCC3_RAD25_C RecG_dom3_C
Other DBs
NCBI-ProteinID: AOS97803
UniProt: A0A1C9W9M4
Position
complement(2737957..2741448)
AA seq 1163 aa
MTSLNPLSPPEFLSATDRQYWGQLCGSAAALAILSAAQRRDTPVLLVTRDSQEAHRLEVQ
LKFFNKSSRDRAGASEGGEELEIIHFPDWEILPYDTFSPHQDIISDRLATLYRLPRMQKG
IVIAPVSTLMHRLAPREYISGNALLLEEGQKFDLATQRRALEQAGYHCVDTVYEHGEFAV
RGSLMDLFPMGSRLPYRIDLFDDEIESLRTFDPETQRTVERVDSVQLLPAREFPMHKAAL
SNFLAHWHEAFECDPANVPIYQDISAGIAPAGIEYYLPLFFGGDCASLFDYLPEGSAAFL
QGDIQKPLENFWREVNNRYESRRGDLSRPILEPAQILLRQDEFNSAIKNLPRAIFSENTL
EEAAGHYNFASQPPPNLPVDGKAEQPLGKLEAYLAGHSGRVLFCAESGGRREALLDLLKG
IRLKPTPFDSWAEFLDSDTTHGIAVAPIDQGLCLDSPAINVIAEPQLFGERVLQQRRRKK
AKDDAENVVKNLAELRIGSPVVHIDHGVGRYRGLQSLDIDGQPAEFLTLEYADEAKLYVP
VASLHLISRYSGADEALAPLHKLGSEQWQKAKRKAAEKVRDAAAELLDIYARREARVGHA
FDNPGLAYREFSAGFPFEETPDQQVAIEAVVADMLSAKPMDRLVCGDVGFGKTEVAMRAA
FVAAHAGKQVAMLVPTTLLAQQHFQSFQDRFADWPVNVEVISRFRSGKEVDSVKERVADG
KVDILVGTHKLLQSDLDFKNLGLLIIDEEHRFGVRQKERLKSLRAEVDILTMTATPIPRT
LNMAMSGIRDLSVIATPPARRLSVKTFVRQRDDALIKEAILREILRGGQVYFLHNEVKSI
ERIARELEALVPEARIATGHGQMRERELEQVMSDFYHKRFNVLICTTIIETGIDVPSANT
ILIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPGKRSMTSDAVKRLEAISEAQDLGAG
FTLATHDLEIRGAGELLGEEQSGQIQSVGFNLYMEMLDRAVKAIREGKTPNIDEPLESTA
VDVNLRVPALIPEDYLPDVHGRLIMYKRIANAATREELRELQVEMIDRFGLLPEPVKHLF
RTTEIKLQANTMGIRKLEASAARGRIEFSEATSVDPLTLVKLVQNQPGVFQLAGANQLTF
ALDESGPEERLAQVTGVLEQLAQ
NT seq 3492 nt   +upstreamnt  +downstreamnt
atgacctctctgaaccccctatctccaccggaatttctctcagcaacagatcgccagtac
tgggggcagctctgcggctcggccgccgcactggccatactgagcgcggcccagcggcga
gatacccctgtgctcctggtcacccgcgacagccaggaagcacaccggctggaggtgcag
ctgaaattttttaacaaaagttcgcgagatagggctggcgccagcgagggcggcgaggag
ctggagatcatccatttcccggactgggaaatccttccgtacgacactttctccccgcac
caggacatcatttccgaccgcctcgcgacgctttaccgactgccccgcatgcaaaagggc
atcgtgatcgcgccggtcagcacgctcatgcacaggctggcaccgcgggaatatatttcc
ggcaatgcactgttgctggaggaagggcagaaattcgatctggccacacagcgccgtgcg
ctcgagcaggcgggctaccactgcgtcgacactgtctatgagcacggcgaatttgccgtc
cgcgggtccctgatggacctgttccccatgggcagccgcctgccctaccggattgacctg
ttcgatgacgagatcgagtcactgcgcacctttgacccggaaacccaacgaaccgtcgag
cgggtggattcagtgcagctgctaccggcgcgggaattcccgatgcacaaggcggccctg
tccaactttctcgcccactggcacgaagcgttcgagtgcgatccagccaatgtgcccatc
tatcaggatatcagcgccggtatcgcacccgcgggcattgaatactacctgccgctcttt
tttggtggcgactgcgccagcctgttcgactacctgcccgagggcagtgcagcatttctc
cagggggacatacaaaagcctctggaaaacttttggcgtgaggtcaacaaccgctacgaa
agccgccgcggcgacctcagcagaccaattctagaaccggcccagattcttctccgtcag
gacgaattcaacagcgcaataaaaaacctgccacgggcaattttttccgaaaacaccctg
gaagaagctgccggccactacaacttcgccagccagccgccacccaacctgccggtagac
ggcaaagcagagcagcctctgggcaagctcgaggcttacctggccggacactccggtcgc
gtgttgttttgcgctgagtcaggtggtcgccgggaggcactgctggacctcctgaaaggg
attcggttgaaaccgacccccttcgactcgtgggcggaattcctcgacagcgacaccacc
cacgggatcgctgtggccccaatagaccagggactttgcctggactcccccgccatcaac
gtcatcgccgagccacagctgtttggcgagcgggtgctgcagcagcgccgacgcaagaag
gccaaggacgacgcagagaatgtggtcaagaacctggccgagctgcgcatcggttctccc
gtcgtacatatcgatcacggcgtcggccgctatcgcggactccagagcctggatatcgat
ggccagccggcggaatttctgaccctcgaatacgctgacgaggccaaactctacgtgccg
gtcgcgagcctgcacctgatcagccgctactccggcgccgacgaggccctggcgcccctg
cataaactcggcagcgagcagtggcagaaggcaaagcgcaaagcagcggaaaaagtgcgc
gacgcggcggccgagctgctggacatctacgcccgccgggaggccagggtcggacatgcc
ttcgacaatccggggctggcataccgcgaattctcggcgggtttcccgttcgaggaaacg
cccgaccagcaggtggccatcgaggccgtcgtcgccgacatgctatccgcgaaacccatg
gaccgacttgtctgtggtgacgtgggcttcggcaagaccgaggtggccatgcgcgcggcg
tttgtcgctgcccatgccggcaaacaggtcgccatgctggtgcccaccaccctgctcgcc
cagcagcacttccaatctttccaggaccgctttgccgactggccggtaaatgtcgaggtg
atctcccgctttcgctcaggaaaggaagtggacagcgtcaaagagcgggtggccgatggc
aaagtggacatcctggttggcacccacaagttgctgcagagcgacctggacttcaaaaac
cttggcctgctgatcatcgatgaggagcaccgcttcggagtgcggcagaaggagcgacta
aagagcctgcgggcagaagtggacatcctgaccatgaccgcgactcccatcccccgcacc
ctgaatatggccatgtcgggtatccgagacctgtcggtgatcgccaccccaccggcccga
cgcctgtcggtgaagacatttgtccgccagcgggacgacgcgctgatcaaggaggcgatc
ctgcgggagatcctccgcggcggtcaggtgtacttcctgcacaacgaagtgaagagcatc
gagcgcatcgcccgcgagctcgaggctctggtacccgaggcgcgtatcgcaaccggccac
ggccagatgcgcgagcgggagctcgaacaggtgatgagcgacttctatcacaaacgcttc
aacgtgctgatttgcaccacgatcatcgaaacaggcatcgacgtaccgagtgccaacacc
attctgatcgagcgcgcagacaagttcgggcttgcccagctgcatcagttgcgcggtcgt
gtgggccgctcccaccaccaggcctatgcctacctgctgacaccgggtaagcgctccatg
accagtgacgcagtcaaacgcctggaagccatcagtgaggcccaggacctgggggctggc
tttaccctcgccacccacgacctggaaatccgcggtgccggcgagctgctgggcgaggag
cagagcggccagatccagagcgtcggcttcaacctctatatggagatgctggaccgggcg
gtcaaagccatccgtgagggcaagacgccaaacatcgacgagccgctggaatccacggcg
gtggacgtcaacctgcgggtaccggcgctgattcccgaggattacctgcccgatgtccac
ggccggctcatcatgtacaaacgcatcgccaatgccgccacccgtgaggagttgcgggag
ctgcaggtagagatgatcgaccgctttgggctgctgccggaaccggtcaaacacctcttc
cggacgactgaaatcaagctgcaggccaacaccatgggcatccgcaagctggaggcctcc
gctgcccgcggccgcatcgagttctcggaggccaccagcgtcgacccactgacactagtg
aagctggtacagaaccagccgggcgtgtttcagctggccggcgccaaccagctgaccttc
gccctggacgaaagcggccccgaggagcggctggcacaagtgacgggagtgttggagcag
ctggcgcaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (21)   

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