KEGG   Mycobacterium intracellulare subsp. intracellulare: MIP_00835
Entry
MIP_00835         CDS       T02325                                 
Name
(GenBank) DNA topoisomerase 1
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
mid  Mycobacterium intracellulare subsp. intracellulare
Brite
KEGG Orthology (KO) [BR:mid00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mid03032]
    MIP_00835
   03400 DNA repair and recombination proteins [BR:mid03400]
    MIP_00835
Enzymes [BR:mid01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     MIP_00835
DNA replication proteins [BR:mid03032]
 Prokaryotic type
  DNA Topoisomerases
   MIP_00835
DNA repair and recombination proteins [BR:mid03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      MIP_00835
SSDB
Motif
Pfam: Topoisom_bac Toprim_C_rpt Toprim Toprim_4 Toprim_2
Other DBs
NCBI-ProteinID: AFS12572
UniProt: J9WDP3
Position
606328..609141
AA seq 937 aa
MADPKLKDSAGGGNGSRRRLVIVESPTKARKLAGYLGSSYIVESSRGHIRDLPRAAADVP
AKYKSEPWARLGVNVDHDFEPLYIISPEKKSTVTELKGLLKDVDELYLATDGDREGEAIA
WHLLETLKPNIPVKRMVFHEITEPAILEAAENPRDLDIDLVDAQETRRILDRLYGYEVSP
VLWKKVAPKLSAGRVQSVATRIIVQRERDRMAFRSASYWDIVAQLDASVSDPQASPPTFS
ARLTNVDGLRVATGRDFDSLGQLRKADEVTILDEPSATELAAGLRGAQLSVASVEEKPYT
RRPYAPFMTSTLQQEAGRKLRFSSERTMSIAQRLYENGYITYMRTDSTTLSQSAINAARN
QARQLYGEEYVSPSPRQYTRKVKNAQEAHEAIRPAGETFATPDAVRRELDGDEFRLYELI
WQRTVASQMADARGTTLSLRIGGRSGERQVVFSASGRTITFPGFLKAYVETVDELAGGEA
DDAESRLPQLTQGQRLDAIELTPDGHATNPPARYTEASLVKALEELGIGRPSTYSSIIKT
IQDRGYVHKKGSALVPSWVAFAVTGLLEQHFGRLVDYDFTAAMEDELDAIASGQERRTDW
LNNFYFGGEHGVADSVARSGGLKKLVGVNLEGIDAREVNSIKLFDDEQGRPVYVRVGKNG
PYLERMVTGDDGERTPQRANLNDSLTPDELTLELAEQLFATPQEGRVLGVDPATGHEIVA
KDGRYGPYVAEVLPEPPPGDDDGGATPAKKGKKPTGPKPRTGSLLRTMDLQTVTLEDALR
LLSLPRVVGVDPESGEEITAQNGRYGPYLKRGTDSRSLATEEQMFDITLEEALKIYAEPK
RRGRQGAAAPPLRELGADPATGKPMVIKDGRFGPYVTDGETNASLRKGDDVLSITDERAA
ELLADRRARGPAKRPAKKAARKSPAKKSAAKKTAKRS
NT seq 2814 nt   +upstreamnt  +downstreamnt
ttggctgacccgaaactgaaggacagtgccggcggcggcaacggaagccgccggcgactc
gtgattgtcgagtcgcccaccaaggcgcgcaaactggccgggtacctgggctccagctac
atcgtcgagtcgtcgcgcggccacatccgcgacctgccccgggccgccgccgacgtgccc
gccaagtacaagtcggagccgtgggccaggctgggcgtgaacgtcgaccacgacttcgaa
ccgctctacatcatcagcccggagaagaagagcaccgtcaccgagctcaagggcctgctc
aaggacgtcgacgagctctatctcgccacggatggcgaccgcgagggcgaagccatcgcc
tggcacctgctggagaccctcaagcccaacatcccggtcaagcggatggtgttccacgag
atcaccgagccggcgatcctggaggccgccgaaaatccccgcgacctcgacatcgatctc
gtcgacgcgcaggagacccgccggatcctggaccgcctgtacggctacgaggtcagcccg
gtgctgtggaagaaggtcgcgcccaagctgtcggcgggccgggtccagtcggtggccacc
cggatcattgtgcagcgcgagcgcgaccgcatggcgtttcgcagcgcgtcctactgggac
atcgtggcccagctcgacgccagcgtgtccgacccgcaggcgtcgccgcccaccttctcc
gcccggctgaccaacgtcgacggcctgcgcgtcgccaccggacgcgacttcgactcgctg
ggacagctgcgcaaggccgacgaggtcaccatcctcgacgaaccaagcgcgaccgagttg
gccgccgggctgcgcggcgcccagctgtccgtcgcctcggtcgaggagaagccctacacg
cgccggccgtacgcgccgttcatgacgtcgacgctgcagcaggaggccggccgcaagctg
cggttctcctccgaacgcaccatgagcatcgcccagcggctctacgaaaacggctacatc
acctatatgcgtaccgactcgaccacgttgtcgcagtcggcgatcaacgccgcccgtaac
caggcgcgtcagctctacggcgaggagtacgtctcgccgtccccacgccagtacacccgc
aaggtgaagaacgcccaggaggcgcacgaggcgatccggcccgccggcgagacgttcgcc
accccggacgcggtgcgacgcgaactcgacggcgacgaattccggctctacgagctgatc
tggcaacgcacggtggcctcgcagatggccgacgcgcgcggcaccacgctgagcctgcgg
atcgggggccgctccggcgagcgtcaagtggtgttctccgccagcggtcggaccatcacg
ttccccggcttcctgaaggcctacgtggagacggtggacgagttggccggcggcgaggcc
gacgacgccgagagccggctgccgcagctcacccagggccagcggctggacgccatcgaa
ctcacgcccgacggccacgccaccaacccgccggcccgctataccgaggcgtcgttggtc
aaggcgctcgaggaactgggcatcggccgcccgtcgacgtattcgtccatcatcaagacc
atccaggaccgtggctacgtgcacaagaagggcagcgccctggtgccgtcctgggtcgcg
ttcgccgtaaccggtttgctggagcagcatttcggccggctggtcgactacgacttcacc
gccgcgatggaggacgagctcgacgcgatcgcctcgggccaggagcggcgcaccgactgg
ctcaacaacttctacttcggcggcgagcacggggtggccgattcggtggcccggtccggc
ggcctgaagaagctcgtcggcgttaacctggaaggcatcgacgcccgagaagtcaactcc
atcaagctctttgacgacgagcagggccgtcccgtctacgtccgggtgggcaagaacggg
ccgtacctggagcgcatggtgaccggagacgacggcgagcgcacgccgcagcgggccaac
ctcaacgactcgctgacccccgacgaattgaccctcgagctggccgagcagctgttcgcc
acgccgcaggagggacgggtgctgggcgtggacccggcgacgggccacgaaatcgtcgcc
aaggacggcagatacggcccgtacgtggccgaggtcctgccggagccgccacccggcgac
gacgacggcggcgccacacccgcgaagaagggcaagaagcccaccggtcccaaaccccgc
accgggtcgctgctgcgcaccatggatttgcagacggtcacgctcgaggacgcgctgcgg
ctgctgtcgctgccccgggtggtcggtgtcgaccccgaatccggcgaggagatcaccgcg
cagaacggccgctacggcccatacctgaagcgcggcaccgattctcgctcgctggccacc
gaggagcagatgttcgacatcaccctcgaggaagcgttgaagatctacgccgagcccaag
cgtcgcggccgccagggcgccgccgcgccgccgctgcgtgagctgggcgccgatcccgcg
accggcaagccgatggtgatcaaggacggccggttcgggccgtacgtcaccgacggcgag
accaacgcgagcctgcgcaagggcgacgacgtgctgtcgatcaccgacgagcgggccgcc
gaactgctggccgaccgccgggcccgcggcccggcgaagcgtcccgccaagaaggccgcc
cgcaagtcaccggccaagaagtcggccgccaagaagaccgccaagcgtagctag

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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