KEGG   Mycobacterium paraintracellulare: OCQ_45090
Entry
OCQ_45090         CDS       T01755                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
mir  Mycobacterium paraintracellulare
Pathway
mir03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:mir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    OCQ_45090
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mir03021]
    OCQ_45090
   03400 DNA repair and recombination proteins [BR:mir03400]
    OCQ_45090
Enzymes [BR:mir01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     OCQ_45090
Transcription machinery [BR:mir03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     OCQ_45090
DNA repair and recombination proteins [BR:mir03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      OCQ_45090
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 DUF496
Other DBs
NCBI-ProteinID: AFC56021
UniProt: A0A7I7TIG7
Position
complement(4725567..4729517)
AA seq 1316 aa
MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMMVERKAIEDQRDADLEARAQKLEAD
LAELEAEGAKADARRKVRDGGEREMRQLRDRAQRELDRLEEIWTTFTKLAPKQLIVDENL
YRELIDRFGEYFTGAMGAESIQKLIENFDIDAEAEILRDVIRNGKGQKKLRALKRLKVVA
AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVDAALGEFK
PAAKDEPEVGVYSSPAEAIMASDRGVLSVRAKIKVRLTQLRPPAEIEAELFGANGWQPGD
AWMAETTLGRVLFNELLPVGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG
FYWATRSGVTVSMADVLVPPRKKEILDQYEERAEKVEKQFQRGALNHDERNEALVEIWKE
ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF
REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGIVVE
LAERQPDGTLIRDPYIETSAYARTLGTDAVDEAGKVVVARGEDLGDPEIEALLAAGITQV
KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
GEDITGGLPRVQELFEARIPRGKAPIADVTGRVRLEEGERFYKITIVPDDGSEEVVYDKL
SKRQRLRVFKHEDGSERVLSDNDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE
VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA
GTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
NT seq 3951 nt   +upstreamnt  +downstreamnt
gtgctcgacgtcaacttcttcgatgaactccggatcggtctggccaccgcggaggacatc
aggcaatggtcttacggcgaggtcaagaagccggagacgatcaactaccgcacgctgaag
ccagagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgtggcgtc
gaggtgacccgcgccaaggtgcgtcgcgagcggatgggccacatcgaactggccgcgccc
gtcacgcacatctggtacttcaagggcgtgccgtcgcggctggggtacctgctcgacctg
gcgccgaaagatctcgagaagatcatctacttcgccgcctacgtcatcacctcggtcgac
gaggagatgcgccacaacgagctctcgacgctcgaggccgaaatgatggtggagcgcaag
gccatcgaggaccagcgcgacgccgacctggaggcccgcgcccagaagctcgaggccgac
ctggccgagctggaggccgagggcgccaaggccgacgcgcgccgcaaggtccgcgacggc
ggcgagcgcgagatgcgtcagctgcgcgaccgggcccagcgtgagctggaccggctcgag
gagatctggacgaccttcaccaagctggctcccaagcagctgatcgtcgacgagaacctc
taccgcgagctgatcgaccgcttcggtgagtacttcaccggcgccatgggcgcggagtcg
atccagaagctgatcgagaacttcgacatcgacgccgaggccgagatcctgcgcgacgtc
atccggaacggcaaggggcagaagaaacttcgcgccctgaagcggctcaaggtggtcgcc
gccttccagcagtcgggcaactcgccgatgggcatggtgctcgacgccgtcccggtgatc
ccgccggaactgcgcccgatggtccagctcgacggtggccggttcgccaccagcgacctc
aacgacctgtaccgccgggtgatcaaccggaacaaccgcctcaagaggctgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgttgcaggagtccgtggacgcg
ttgttcgacaacggccgtcgcggccgcccggtcaccggacccggtaaccgcccgctgaag
tcgctgtccgatctgctcaagggtaagcagggccggttccgtcagaacctgctcggcaag
cgtgtcgactactcgggccgcagcgtcatcgtggtcggcccgcagctcaagctgcaccag
tgcggtctgcccaagctgatggcgctggagctgttcaagccgttcgtgatgaagcggctg
gtcgacctcaaccacgcgcagaacatcaagagcgccaagcgcatggtggagcgccagcgt
ccccaggtgtgggatgtcctcgaagaggtcatcgccgagcacccggtgctgctgaaccgc
gcgcccaccctgcaccggctgggtatccaggccttcgagccgatgctggtggaaggcaag
gcaattcagctgcacccgctggtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggcggtgcacctgccgctgtccgccgaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctgtcgcccgcgtcgggccgtccgctggccatgccgcgtctggac
atggtgaccgggctgtactacctgaccaccgaggtcgacgccgccttgggcgaattcaag
cccgccgccaaggacgagcccgaggtcggggtgtactcctcaccggccgaggcgatcatg
gcgtccgaccgtggcgtgctgtcggtgcgggccaagatcaaggtgcggctgacccagctg
cgcccgcccgccgagatcgaggccgagctgttcggcgccaacggctggcagccgggggac
gcctggatggccgagaccacgctgggccgggtgctgttcaacgagctgctgccggtgggc
tatccgttcgtgaacaagcagatgcacaagaaggtgcaggcagccatcatcaacgacctg
gccgagcgctacccgatgatcgtggtcgcgcagaccgtcgacaagctcaaggacgccggt
ttctactgggcgacccgcagcggtgtcaccgtgtcgatggccgacgtgctcgtgccgccg
cgcaagaaggagatcctcgaccagtacgaggagcgggcggaaaaggtcgaaaagcagttc
cagcgtggcgctttgaaccacgacgagcgcaacgaggcgctggtggagatctggaaggaa
gccaccgacgaggtcggtcaggcgctgcgtgagcactacccggccgacaacccgatcatc
acgatcgtcgactcgggtgccacgggtaacttcacccagacccggacgctggccggcatg
aagggtctggtgaccaaccccaagggtgagttcatcccgcgtccggtcaagtcgtcgttc
cgcgagggcctgaccgtgctggagtacttcatcaacacccacggcgcccgaaagggcctg
gcggacaccgcgttgcgtaccgccgactccgggtacctgacccgtcgtctggtggacgtg
agccaggacgtcatcgtccgcgagcacgactgcgagaccgagcggggcatcgtcgtcgag
ctggccgagcgtcagcccgacggcaccctgatccgcgacccgtacatcgaaacctcggcg
tacgcacggactttgggcaccgacgcggtcgacgaggccggcaaggtcgtcgtcgctcgc
ggcgaggacctgggtgacccggagatcgaggcgctgctggcggccggcatcacgcaggtc
aaggtgcgctcggtgctgacgtgcaccaccggcaccggggtgtgcgcgacctgttacggg
cggtccatggccaccggaaagctggtcgacatcggcgaggccgtcggtatcgtcgcggcc
cagtccatcggtgagcccggtacgcagctgaccatgcggacgttccaccagggtggtgtc
ggtgaggacatcaccggcggtctgccccgggtccaggagctgttcgaggcccgcatcccg
cgcggcaaggcgccgatcgccgacgtcaccgggcgggtccgcctcgaggagggcgagcgc
ttctacaagatcaccatcgttcccgacgacgggagcgaggaggtcgtgtacgacaagctc
tccaagcggcagcggctgcgcgtgttcaagcacgaagacggttccgagcgggtgctctcc
gacaacgaccacgtcgaggtgggccagcagctgatggaaggctcggccgacccgcacgag
gtgctgcgcgtgcagggcccccgcgaggtgcagatccacctggtccgcgaggtccaggag
gtctaccgcgcgcagggtgtgtcgatccacgacaagcacatcgaggtgatcgttcgccag
atgctgcgccgcgtcaccatcatcgactcgggctcgacggagtttttgcccggctcgctg
atcgaccgcgcggagttcgaggcggagaaccgccgggtggtggccgagggcggcgagccc
gccgccggccgtccggtgctgatgggtatcacgaaggcgagcctcgccaccgactcgtgg
ctgagcgcggcgtcgttccaggagaccacgcgagtgctgaccgatgcggcgatcaactgc
cgcagcgacaagctcaacggtctgaaggagaacgtgatcatcggaaagctgatcccggcc
ggtaccggcatcaaccgctaccgcaacatccaggtgcagccgaccgaggaggcccgggcc
gccgcgtacacgatcccgtcctacgaggatcagtactacagcccggacttcggccaggcc
accggcgccgcggttccgttggacgactacggctacagcgactaccggtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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