KEGG   Mycobacterium intracellulare MOTT-02: OCO_13000
Entry
OCO_13000         CDS       T01754                                 
Name
(GenBank) ATP-dependent rna helicase, dead/deah box family protein
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
mit  Mycobacterium intracellulare MOTT-02
Pathway
mit03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mit00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    OCO_13000
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mit03019]
    OCO_13000
   03009 Ribosome biogenesis [BR:mit03009]
    OCO_13000
Messenger RNA biogenesis [BR:mit03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     OCO_13000
Ribosome biogenesis [BR:mit03009]
 Prokaryotic type
  rRNA helicases
   OCO_13000
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII HEM4 UvrA_inter CMS1 AAA_19
Other DBs
NCBI-ProteinID: AFC47663
Position
1311264..1312967
AA seq 567 aa
MTLSDSSTGAASTTFADLQIHPSVLRAVADVGYESPTGIQAATIPALMAGSDVVGLAQTG
TGKTAAFAIPILSKIDVTSTATQALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGS
SYSVQLAGLRRGAHVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRI
LSETPEYKQVALFSATMPPAIRKLTTKYLHDPLEVSTKAKTATAENISQRYIQVAGPRKM
DALTRVLEVEPFEAMIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQGQRERTVAALKD
GSIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRE
RHLLKAIEKATRQTLTETALPTVEDVNAQRVAKFADSITTALGAPGIDLFRKLVQDYERE
HDTPMADIAAALALQSRDGEEFLMSPEPPPERRERRTERRDRPEKPRSTRPFATYRIAVG
KRHKIGPGAIVGAIANEGGLHRSDFGHIAIGPDFSLVELPAKLPKSTFKRLEQTRISGVL
INLQPDRSSAKARGGRDGGKPRRKHGE
NT seq 1704 nt   +upstreamnt  +downstreamnt
atgaccctctcagacagctcgaccggggctgcctctacgacgtttgccgacctgcagatc
cacccctcggtgctgcgggcggttgccgacgtcggctacgaatcacccaccggtatccag
gccgcgacgatcccggcgctgatggcgggctccgacgtggtcgggctggcgcagaccggc
accggcaagaccgccgcgttcgcgatcccgatcctgtccaaaatcgacgtcaccagcacc
gccacccaagccctggtgctcgccccgacccgggagctggccctgcaggtcgccgaggcg
ttcagccggtacggagcccacctgcccaagatcaacgtgctgccgatctacggcggctcg
tcctacagcgtgcagctggccgggctgcggcgcggggcgcacgtggtggtcggcacgccc
ggccgggtgatcgaccacctcgaacgggggacgctggacctgtcccacgtcgactacctg
gtgctcgacgaggccgacgagatgctcaccatgggcttcgccgaagaggtcgatcgcatc
ctgtcggagaccccggaatacaagcaggtggcactgttctccgcgaccatgccgcccgcg
atccgcaagctcaccaccaagtacctgcacgacccgctcgaggtcagcaccaaggcgaaa
accgcgaccgccgagaacatctcgcagcgctacatccaggtcgccggtccccgcaagatg
gacgcgctgacccgggtgctcgaggtcgagccgttcgaggcgatgatcgtcttcgtcaga
accaaacaggccaccgaggaagtcgccgaaaagctaagggcgcgaggtttctccgccgcg
gccatcaacggggacatcccgcagggccagcgcgagcggaccgtcgccgccttaaaggac
ggcagcatcgacatcctggtcgccaccgacgtggccgcacgcggactcgacgtggagcgg
atctcgcacgtgctcaactacgacatcccgcatgacaccgagtcgtacgtgcaccggatc
gggcgcaccggcagggccggacgttcgggcaccgcgctgctgttcgtttcgccgcgagag
cgccacctgctcaaagcgatcgaaaaggccacgcggcaaacgctcaccgaaaccgccttg
cccaccgtcgaggacgtcaacgcgcaacgggtggccaagttcgccgattcgatcaccacc
gcgctcggggcccccggcatcgacctgttccgcaagctggtccaggactacgaacgcgaa
cacgacaccccgatggccgatatcgccgccgcgctggccctgcaatcccgcgacggcgag
gaattcctgatgtcgcccgaacctccgcccgagcgtcgcgagcggcgcaccgagcgccgc
gaccgccccgaaaagccaaggtctacacggccgttcgccacgtatcgcatcgcggtgggc
aagcgccacaagatcggtccgggcgccatcgtgggcgccatcgccaacgagggagggctg
catcgcagcgacttcggccacatcgcgatcggcccggacttctcgttggtggaactgccg
gccaagttgcccaagtcgacgttcaaaaggcttgagcagacccgcatctcgggggtgttg
atcaaccttcagccggacaggtcctcagccaaggcccgcggcggccgggacggcgggaaa
ccgcgcaggaaacacggcgaatga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (17)   

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