KEGG M.jannaschii: MJ1042

Methanococcus jannaschii: MJ1042

Entry

MJ1042 CDS M.jannaschii

Definition DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)

Orthology K03041 DNA-directed RNA polymerase subunit A' [EC:2.7.7.6]

Pathway mja00230 Purine metabolism
mja00240 Pyrimidine metabolism
mja01100 Metabolic pathways
mja03020 RNA polymerase

Class Metabolism; Nucleotide Metabolism; Purine metabolism [PATH:mja00230]
Metabolism; Nucleotide Metabolism; Pyrimidine metabolism
[PATH:mja00240]
Genetic Information Processing; Transcription; RNA polymerase
[PATH:mja03020]

SSDB

Motif Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
RNA_pol_Rpb1_5 SpoVT_AbrB
PROSITE: EF_HAND_1 INTEIN_N_TER INTEIN_C_TER INTEIN_ENDONUCLEASE

Other DBs NCBI-GI: 15669231
NCBI-GeneID: 1451939
TIGR: MJ1042
UniProt: Q58445

Position 974606..978631

AA seq 1341 aa
MERYEIPKEIGEIMFGLLSPDYIRQMSVAKIVTPDTYDEDGYPIDGGLMDTRLGVIDPGL
VCKTCGGRIGECPGHFGHIELAKPVIHIGFAKTIYKILKAVCPHCGRVAISETKRKEILE
KMEKLERDGGNKWEVCEEVYKEASKVTICPHCGEIKYDIKFEKPTTYYRIDGNEEKTLTP
SDVREILEKIPDEDCILLGLNPEVARPEWMVLTVLPVPPVTVRPSITLETGERSEDDLTH
KLVDIIRINNRLEENIEGGAPNLIIEDLWNLLQYHVNTYFDNEAPGIPPAKHRSGRPLKT
LAQRLKGKEGRFRYNLAGKRVNFSSRTVISPDPCLSINEVGVPEVVAKELTVPEKVTKYN
IERIRQLLRNGSEKHPGVNYVIRKMIGRDGTEQEYKVKITESNKDFWAENIREGDIVERH
LMDGDIVLYNRQPSLHRMSIMAHRVRVLPYRTFRHNLCVCVDGDTTVLLDGKLIKIKDLE
DKWKDVKVLTSDDLNPKLTSLSKYWKLNADEYGKKIYKIKTELGREIIATEDHPFYTTNG
RKRCGELKVGDEVIIYPNDFPMFEDDNRVIVDEEKIKKVINNIGGTYKNKIINELKDRKL
IPLTYNDQKASILARIVGHVMGDGSLIINNKNSRVVFRGDIEDLKTIKEDLKELGYDGEE
IKLHEGETEITDYNGKKRIIKGKGYSFEVRKKSLCILLKALGCVGGDKTKKMYGIPNWIK
TAPKYIKKEFLSAYFGSELTTPKIRNHGTSFKELSFKIAKIEEIFDEDRFIKDIKEMLKE
FGIELKVRVEEGNLRKDGYKTKVYVASIYNHKEFFGRIGYTYANKKETLARYAYEYLLTK
EKYLKDRNIKKLENNTKFITFDKFIKEKCLKNGFVKEKIVSIEETKVDYVYDITTISETH
NFIANGFLTGNCPPYNADFDGDEMNLHVPQSEEARAEAEALMLVEKHILSPRFGGPIIGA
IHDFISGAYLLTSNYFTKDEATLILRSGGIKDELWEPDKVENGVPLYSGKKIFSKALPKG
LNLRYKAKICRKCDVCKKEECEYDAYVVIKDGELIKGVIDKNGYGAEAGLILHTIVKEFG
PEAGRKFLDSATKMAIRAVMLRGFTTGIDDEDLPEEALKEIEKVLDEAEEKVKEIIEKYE
RGELELLPGLNLEESREAYISNVLREARDKAGAIAERYLGLDNHAVIMAVTGARGNILNL
TQMAACLGQQSVRGKRIFRGYRGRVLPHFEKGDLGARSHGFVRSSYKKGLSPTEFFFHAM
GGREGLVDQAVRTAQSGYMQRRLINALQDLKTEFDGTVRDSRGIMIQFKYGEDGIDPMLA
DRGKAVNIDRIIDKVKMKYNQ

NT seq 4026 nt +upstreamnt +downstreamnt
atggagaggtatgaaatccctaaagagattggagaaataatgtttggcttgttgtctcca
gattacataagacagatgtcagttgctaagatagttacaccagacacttatgatgaagat
ggttatccaatagatggaggtttaatggacacaagattgggagttatagacccaggttta
gtttgcaaaacatgtggaggaaggattggagagtgtccagggcattttgggcatatagag
ttggctaaaccagtaattcatataggatttgccaaaacaatatacaagatattgaaggca
gtttgcccacactgtggaagagtagcaataagtgaaactaagaggaaagaaattttggaa
aagatggaaaaattagagagagatggaggaaacaagtgggaggtttgtgaagaggtttat
aaagaagcttcaaaagttacaatctgcccacactgtggagagataaagtatgatataaag
tttgagaaaccaacaacctactacagaattgatggaaatgaggaaaaaacattaactcca
tcagatgttagagagattttagagaagattccagatgaagattgtatcttactcggctta
aacccagaggttgcaaggccagagtggatggttctcaccgttttgccagttccaccagta
actgtaaggccatcaattaccttggaaactggagagagaagtgaagacgatttaactcac
aagttagttgatatcatcagaatcaacaatagattagaggagaatatagaaggaggagca
ccaaacttaattattgaggatttatggaatctgttgcagtatcacgtaaatacctacttc
gataacgaagctccaggtattccaccagctaagcacagaagtggaagaccattaaaaacc
ttagctcagagattaaaaggtaaagaaggaaggttcagatacaacttagctggtaagagg
gttaatttctcatcaagaacagttatctctccagacccatgtttaagtattaatgaagtt
ggagttccagaggttgtggctaaagagctaaccgtcccagagaaggtaacgaaatacaac
attgagagaattaggcagttattaagaaatggttcagagaaacacccaggagttaattat
gttataagaaagatgattggtagagatggaacagagcaggaatataaggttaagataact
gaaagcaataaagacttctgggcagagaatataagagaaggagatattgttgaaaggcac
ttaatggatggagatattgtcttatacaacagacagccatcactgcatagaatgtctatt
atggcacatagagttagagttctcccatacagaacatttagacacaatttatgcgtatgt
gtagatggagacaccacagtgttgttagatgggaaattaattaaaattaaggacttagaa
gataaatggaaagatgtcaaagttttaacttcagatgatttaaatccaaaactaacttca
ttaagcaagtattggaaattaaacgcagatgagtatggaaagaagatttataaaataaaa
acagagcttggaagagaaattatagcaacagaagaccatccattctatacaacaaatggt
agaaagagatgcggtgagttgaaagttggagatgaagttataatatatccaaacgacttc
ccaatgtttgaagatgacaatagagtaatagttgatgaagaaaaaatcaagaaggtaatt
aataacattggaggaacttacaaaaataaaattattaatgagctaaaagataggaagtta
attcctttgacatacaatgaccaaaaggcatcaatattggcaaggattgttggacatgta
atgggagatggttctttaataataaacaataaaaattcaagagttgtatttagaggagat
attgaggatttaaaaacaataaaagaggacttaaaagaattaggttatgatggggaggaa
ataaaactacatgaaggagaaactgaaataacagattacaacggcaagaaaagaataatt
aaaggcaaaggttatagctttgaagttaggaaaaaatcgttatgcatactattaaaagcc
cttggttgtgtaggtggagataaaactaaaaagatgtatggcattccaaattggattaaa
actgctccaaagtatataaagaaagagtttttatcagcctacttcggttcggaattaaca
actccaaaaattagaaatcatgggacttcatttaaagagttatcattcaaaatagctaag
attgaggagatatttgacgaagatagattcattaaagacattaaagagatgctaaaagaa
tttggtattgaattaaaggttagggttgaagaaggcaatctaagaaaagatggttataaa
acaaaagtttatgttgcgtcaatatacaaccataaagaattctttggaagaattggatat
acctatgctaacaaaaaagaaacattagcaagatatgcttatgaatacctccttacaaaa
gagaaatatctaaaagacagaaacattaaaaaattagaaaataacaccaaatttattaca
tttgataagtttataaaagagaaatgccttaagaatggatttgtaaaagaaaaaattgta
agtattgaagaaacaaaagtagattatgtctatgatataactacaatctcagaaactcac
aatttcattgcaaacggctttttaacaggaaattgcccgccctacaacgctgactttgat
ggagatgagatgaacttacacgttccacaatcagaggaggcaagagcagaggcagaagct
ttaatgcttgtagaaaaacacatcctttcaccaagatttggagggcctataattggagct
atacacgactttatttcaggagcttatctcttaacctcaaactacttcacaaaagatgaa
gctactttaatcttaagaagtgggggaataaaggatgagttatgggagccagataaggta
gagaatggagttccattatactccggtaagaagatattcagtaaagcattaccaaaagga
ttgaatttgagatataaagcaaagatttgtagaaagtgtgatgtgtgcaaaaaagaggaa
tgtgaatacgatgcctatgttgtaataaaagatggggagttaattaaaggagttattgat
aaaaacggttacggggcagaggcaggtttaatcttacacacaatagttaaagagtttggt
ccagaagctggaagaaaattccttgactcagctactaagatggcaataagggcagtgatg
ttaagaggatttactacaggaattgatgatgaagatttaccagaagaagcattaaaagag
attgaaaaagtcttagatgaggcagaagagaaagttaaagaaatcatcgagaaatatgaa
agaggagaacttgaattgcttccaggtttgaacttggaggagtcaagggaggcatatata
agcaatgttttaagagaggcaagagacaaagctggagctattgctgagagatacttaggt
ttggataaccatgcggttatcatggcagttactggggcgagagggaacatcttaaactta
acacagatggcggcatgtttagggcagcagtcagttagaggtaagagaatctttagaggt
tacaggggtagagtattgcctcatttcgaaaaaggagatttaggagcaaggtctcacggg
tttgttagaagtagttataagaaggggttaagtccaacagagttcttcttccacgctatg
ggaggtagagaaggattggttgaccaggcagttagaactgctcagtctggttacatgcag
agaagattaattaacgctctacaagacttaaagacagagttcgatggaaccgttagagat
tcaagaggaattatgattcaatttaagtatggagaggatggaattgacccaatgcttgct
gatagaggtaaggcagtaaatattgacagaataattgataaggttaagatgaagtataac
caataa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   TIGR (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (10)   
   Pfam (6)   
   PROSITE (4)   
All databases (25)

DBGET integrated database retrieval system