KEGG   Methanocaldococcus jannaschii: MJ_0507
Entry
MJ_0507           CDS       T00003                                 
Name
(GenBank) transcription initiation factor IID, TATA-box binding protein
  KO
K03120  transcription initiation factor TFIID TATA-box-binding protein
Organism
mja  Methanocaldococcus jannaschii
Pathway
mja03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:mja00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    MJ_0507
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:mja03000]
    MJ_0507
   03021 Transcription machinery [BR:mja03021]
    MJ_0507
Transcription factors [BR:mja03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   TATA-binding proteins
    MJ_0507
Transcription machinery [BR:mja03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     MJ_0507
  RNA polymerase III system
    TFIIIB
     MJ_0507
  RNA polymerase I system
    SL1/TIF-1B
     MJ_0507
SSDB
Motif
Pfam: TBP DUF3378 PAD_M Sigma70_r1_1
Other DBs
NCBI-ProteinID: AAB98497
UniProt: Q57930
Structure
Position
complement(447726..448277)
AA seq 183 aa
MKIMEPEIKIVNVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFR
SGKVNCTGAKSKEEAEIAIKKIIKELKDAGIDVIENPEIKIQNMVATADLGIEPNLDDIA
LMVEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVITGLKSEEDAKRALKKILDTIKEV
QEL
NT seq 552 nt   +upstreamnt  +downstreamnt
gtgaaaatcatggaaccagaaattaagattgttaatgttgtagtctcaacaaaaattgga
gacaatattgatttagaagaggttgctatgattttagaaaatgctgaatatgagccagaa
caattcccagggttagtttgtagattatcagtgccaaaagttgctttattaatatttaga
agtggaaaggtaaattgtactggagctaagagcaaagaagaggcagaaatagccattaaa
aagattataaaagagttaaaagatgccggaattgatgttattgaaaaccctgaaattaaa
atccaaaatatggtcgcaacagctgatttaggaattgagccaaatttagatgacattgcc
ttaatggttgaaggaactgaatatgagccagaacaattcccagggttagtttataggttg
gatgacccgaaggttgttgttttaatatttggtagtggtaaggtcgttattactggttta
aagagtgaggaagatgccaaaagagctctaaagaagattttagatacaataaaagaagtt
caagaactctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
3D Structure (1)   
   PDB (1)   
Protein domain (4)   
   Pfam (4)   
All databases (21)   

Download RDF
DBGET integrated database retrieval system