KEGG   Mycolicibacter sinensis: JDM601_0683
Entry
JDM601_0683       CDS       T01512                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta chain RpoC
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
mjd  Mycolicibacter sinensis
Pathway
mjd03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:mjd00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    JDM601_0683 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mjd03021]
    JDM601_0683 (rpoC)
   03400 DNA repair and recombination proteins [BR:mjd03400]
    JDM601_0683 (rpoC)
Enzymes [BR:mjd01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     JDM601_0683 (rpoC)
Transcription machinery [BR:mjd03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     JDM601_0683 (rpoC)
DNA repair and recombination proteins [BR:mjd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      JDM601_0683 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: AEF34683
UniProt: F5Z3F7
Position
726129..730079
AA seq 1316 aa
MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVDTEMRHNELSTLEAEMVVEKKAVEDQRDADLEARAQKLEAD
LAELEAEGAKADVRRKVRDGGEREMRQLRDRAQRELDRLDNIWDTFVKLAPKQLIVDETV
YRELVDRYGEYFTGAMGAESIQKLIETFDIDAEAESLRDTIKNGKGQKKLRALKRLKVVA
AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYFLTTEIEGDTGEYT
PAAKDRPESGVYSSPAEAIMAVDRGALSVRAKIKVRLDQLRPPAEVETELFGENGWRPGD
AWMTETTLGRVMFNELLPVGYPFVNKQMHKKVQAVIINDLAERYPMIVVAQTVDKLKDAG
FYWATRSGVTVSMADVLVPPRKKEILDSYEERADKVEKQFQRGALNHDERNEALVEIWKE
ATEEVGQALRDHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF
REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCGTERGILVE
LAEVAADGSLIRDPFIETSAYARTLAVDAVDEKGNVVIERGHDLGDPSIEALLGAGISQV
KVRSVLTCATGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
GEDITGGLPRVQELFEARIPRGKAPIADVAGRVQLEEGDKFYKITIVPDDGGEEVVYDKL
PKRQRLRVFKHEDGSERLLADGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVKEVQQ
VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFETENRRVVAEGGEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKENVIIGKLIPA
GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR
NT seq 3951 nt   +upstreamnt  +downstreamnt
gtgctcgacgtcaacttcttcgatgagctccgcatcggcttggcgaccgcggaggacatc
cggcaatggtcctacggcgaggtcaagaagccggaaaccatcaactaccgcacgctcaag
cccgagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaaatacaagcgcgtgcgcttcaagggcatcatctgtgagcgctgtggcgtc
gaggtgacccgtgccaaggtgcgccgtgagcggatgggccacatcgaactggccgcgccg
gtcacccacatctggtacttcaagggcgtgccatcccggttgggctacctgctcgacctg
gcgcccaaggacctcgagaagatcatctacttcgccgcctacgtcatcaccagcgtcgac
accgagatgcgtcacaacgagctgtccacgctggaagccgagatggtcgtcgagaagaag
gccgtcgaggaccagcgcgacgccgacctggaggcccgtgcccagaagctggaggccgac
ctggccgagctggaggccgagggtgcgaaagccgatgtgcggcgcaaggttcgcgacggc
ggcgagcgcgagatgcgtcagctgcgcgaccgcgcccagcgtgagctggaccggctcgac
aacatctgggacaccttcgtcaagctggctcccaagcagctgatcgtcgatgagaccgtc
taccgggagctggtcgaccgctacggcgagtacttcaccggtgcgatgggtgccgagtcg
atccagaagctcatcgagaccttcgacatcgacgccgaggccgagtcgctgcgcgacacc
atcaagaacggcaaggggcagaagaagcttcgcgccctcaagcggctcaaggtggtcgcc
gccttccagcagtcgggcaactccccgatgggcatggtgctcgacgcggtgccggtgatc
ccgccggagctgcgcccgatggtgcagctcgacggtggccggttcgccacgtccgacctc
aacgacctgtaccgccgggtcatcaaccgcaacaaccggctgaagcggctgatcgacctc
ggcgctcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtccgtcgacgcg
ttgtttgacaacggccgtcgcggccggcccgtcaccgggcccggcaaccgcccgctgaag
tcgctgtcggatctgctcaagggcaagcagggccggttccggcagaacctgctcggcaag
cgtgtcgactactcgggccgttcggtcatcgtggtcggcccgcagctcaagctgcaccag
tgcggtctgcccaagctgatggccctcgagctgttcaagccgttcgtgatgaagcggctg
gtggacctcaaccacgcgcagaacatcaagagcgccaagcggatggtggagcggcagcgc
ccccaggtgtgggacgtcctcgaagaggtcatcgccgagcacccggtgctgctcaaccgt
gcccccacgctgcaccgcctgggtatccaggccttcgagccgcaactggtggagggcaag
gccattcagctgcacccgctggtgtgtgaggccttcaacgccgacttcgacggtgaccag
atggcggtgcacctgccgttgagcgccgaggcgcaggccgaagcccgcatcctgatgctg
tcgtccaacaacatcctgtcgccggcttcgggtcgtccgctggccatgccgcgactggac
atggtgaccggactgtacttcctgaccaccgagatcgaaggtgacacaggcgaatacacc
ccggcagccaaggaccgtccggagagcggcgtctactcctcgcccgccgaggcgatcatg
gccgtcgaccgcggtgcactctcggtgcgcgccaagatcaaggtgcgcctggaccagctg
cggccgccggccgaggtggagaccgagctgttcggcgagaacggctggcgtcccggtgac
gcctggatgaccgagaccacgctgggccgggtgatgttcaacgagctgctgcccgtgggc
tacccgttcgtgaacaagcagatgcacaagaaggttcaggccgtcatcatcaacgacctg
gccgagcgctacccgatgatcgtggtcgcccagaccgtggacaagctcaaggacgccggc
ttctactgggccacccgttcgggggtcacggtctcgatggccgacgtgctggtgccgccg
cgcaagaaggagatcctggactcctacgaggagcgcgccgacaaggtcgaaaagcagttc
cagcgtggcgctctcaaccacgacgagcgcaacgaggcgctggtggagatctggaaggaa
gccaccgaggaggtggggcaggcgctgcgtgaccactacccggccgacaacccgatcatc
accatcgtcgactccggcgcgacgggtaacttcacccagacccggacgctggccggcatg
aagggtctggtgaccaaccccaagggtgagttcatcccgcggccgatcaagtccagcttc
cgcgagggcctgacggtgctggagtacttcatcaacacccacggcgcccgaaagggtttg
gcggacaccgcgttgcgtaccgccgactcgggctacctgacccgtcgtctggtggacgtc
tcgcaggacgtgatcgtgcgcgagcacgactgcggcaccgaacgcggcatcctggtggaa
ctggccgaggtggctgccgacggttcgctgatccgcgacccgttcatcgagacctcggcg
tacgcccgcacgttggcggtcgacgccgtcgacgagaagggcaacgttgtcatcgagcgc
ggccacgacctcggcgacccgtcgatcgaggcactgctgggtgcgggtatctcgcaggtg
aaggtgcgttcggtgctgacctgtgccaccggaaccggcgtctgcgcgacctgctacggc
cggtcgatggcgaccggcaagctggtcgacatcggcgaggccgtcggcatcgtcgcggcg
cagtccatcggtgagcccggtacccagctgaccatgcgcaccttccaccagggtggcgtc
ggtgaggacatcaccggtggtctgccgcgggtgcaggagctgttcgaggcgcggatcccg
cgcggcaaggcgccgatcgccgacgtcgccggacgggtgcaactcgaggagggcgacaag
ttctacaagatcacgatcgtgccggacgacggtggcgaggaagtggtctacgacaagttg
cccaagcgccagcggctgcgggtgttcaagcacgaagacggttccgagcggttgctggcc
gacggtgaccacgtcgaggtcggacagcagctcatggagggctcggccgacccgcacgag
gtgctgcgcgtgcagggcccgcgcgaggtgcagatccacctcgtcaaggaggtccagcag
gtctaccgggcccagggcgtgtcgatccacgacaagcacatcgaggtgatcgtccggcag
atgctgcgccgggtgaccatcatcgactcgggcgccacggagttcctgcccggttcgctg
accgagcgcgccgagttcgagaccgagaaccgtcgggtggtggccgagggcggcgagccc
gcggcgggccgtccggtgctgatggggatcaccaaggcgtcgctggccacggattcgtgg
ctctcggcggcgtcgttccaggagaccacccgcgtgctgaccgatgcggcgatcaactgc
cgcagcgacaagctgcagggtctgaaggagaacgtgatcatcggcaagctgatcccggcc
ggcaccgggatcaaccgctaccgcaacatcgcggtgcagccgaccgaggaggcccgggcc
gccgcgtacacgatcccgtcgtacgaggatcagtactacagcccggacttcggcgccgcc
accggtgccgcggttccgctggacgactacgggtacagcgactaccggtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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