KEGG T00442: Mkms

Mycobacterium sp. KMS: Mkms_1846

Entry

Mkms_1846 CDS T00442

Gene name

ligB

Definition

ATP-dependent DNA ligase (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

mkm Mycobacterium sp. KMS

Pathway

mkm03410	Base excision repair
mkm03420	Nucleotide excision repair
mkm03430	Mismatch repair
mkm03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:mkm03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:mkm03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:mkm03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:mkm03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C BMC

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(1960743..1962305)

AA seq 520 aa
MLLVDVATASVDVGAMSSRLAKTARIADLLSRAGTEQDARLVAVTVAWLSGELPQRQIGV
GWAALRSLPAPAAAPTLTVTAVDAVFSEIGAVAGKGSQARRAGLIAELFAAATDVEQTFL
RRLLTGELRQGALIGVMADAVAKAADVPAARVRRAAMLAGDLPAVAAAVLAGGDAALARF
TLQVGRPVGPMLAQTATGVADALDRLGGTAVFEAKLDGARVQIHRRGSDVSVYTRSLDDV
TARLPEVVEAALALPVTDLIADAEAIALRPDGRPHRFQVTASRFGRAAARATQPLSVFMF
DLLHVDGADLLDQPTSDRVRVLDDLVPAAHRVDRLVTDDGAAAQRFLEATLAAGHEGVMA
KSPNAPYEAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRTGKLSNIHLGARDPATGGFVM
LGKTFKGMTDAMLDWQTARFLELADPAAQPATSGRDPTDGHTVKVRPEQVVEIAFDGVQG
STRYPGGMALRFARVLRYRDDKSPAEADTVDTVRAFYEHG

NT seq 1563 nt +upstreamnt +downstreamnt
gtgctgctcgtcgatgtcgccaccgcgtcggtcgacgtcggcgcgatgtcgtcgcggctg
gccaagacggccaggatcgccgatctgctgagccgcgcgggcaccgaacaggatgcccgg
ctcgtcgcggtgacggtggcgtggctgtccggtgaactcccccagcgccagatcggtgtc
ggctgggcggccttgcgttcgctcccggccccggccgccgcgcccacactgaccgtgacg
gcggtcgacgcggtgttctccgagatcggcgcggtggccggaaaaggttcgcaggcccgc
cgggcgggtctcatcgccgagttgttcgccgccgccaccgacgtcgagcagaccttcctg
cgccgcctgctgaccggggaactgcgtcagggggcgttgatcggggtgatggccgacgcc
gtcgccaaggccgccgatgtgcccgccgcccgggtgcgccgggcggcgatgctcgccggt
gacctgcccgcggtggccgccgctgtgctcgccggaggggacgccgcgctggcccggttc
accctgcaggtgggccggcccgtcgggccgatgctcgcccagaccgcaacgggagtcgcc
gacgcactggaccggttgggcggcacggcggtgttcgaggcgaaactcgacggcgcccgc
gtgcagatccaccgtcggggatcggacgtgtcggtgtacacccgatccctcgacgacgtc
accgcgcgcctgccggaggtcgtcgaggctgcgctcgcactgccggtcaccgacctgatc
gccgacgccgaggcgatcgcgctgcgcccggacggccgcccgcaccggttccaggtgacc
gcatcgcggttcggccgggcggcagcgcgcgccacgcagccgctgtcggtgttcatgttc
gacctgctgcacgtcgacggcgccgatctgctcgatcagccgaccagcgaccgggtgcgc
gtcctcgacgacctcgtgcccgcggcgcaccgcgtcgaccggctcgtcaccgacgacggc
gccgccgcgcagcggttcctggaggcgacgctcgccgccggacacgagggcgtgatggcg
aagtcaccgaacgcgccgtacgaagcgggccgccgcggggcgggctggttgaaggtcaaa
cccgtccacaccctcgatctggtcgtgctcgccgtcgaatggggcagcggcaggcgcacc
gggaagctgtccaacatccacctcggcgcccgcgaccccgcgaccgggggtttcgtcatg
ctgggcaagacgttcaaggggatgaccgacgcgatgctcgactggcagaccgcccggttc
ctcgaactggccgacccagccgcgcagccggcgacatccggccgcgatccgaccgacggc
cacaccgtcaaggtccggcccgaacaggtggtcgagatcgcgttcgacggcgtccagggt
tcgacgcggtatccgggcggcatggcattgcggttcgcccgcgtcctgcgctaccgcgac
gacaaatcgccggccgaggcggatacggtcgacaccgtccgtgccttctacgagcacggc
tga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-MKM (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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