KEGG   Methylomonas koyamae: MKLM6_2114
Entry
MKLM6_2114        CDS       T05118                                 
Name
(GenBank) ssDNA exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mko  Methylomonas koyamae
Pathway
mko03410  Base excision repair
mko03430  Mismatch repair
mko03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:mko00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    MKLM6_2114
   03430 Mismatch repair
    MKLM6_2114
   03440 Homologous recombination
    MKLM6_2114
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mko03400]
    MKLM6_2114
DNA repair and recombination proteins [BR:mko03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     MKLM6_2114
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     MKLM6_2114
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      MKLM6_2114
SSDB
Motif
Pfam: DHHA1 RecJ_OB DHH Peripla_BP_6 Glyco_transf_4 Dict-STAT-coil
Other DBs
NCBI-ProteinID: ATG90342
UniProt: A0A291IJ64
Position
2337394..2339139
AA seq 581 aa
MYLQSVKKVIVPRPELVKNPHFGEMDPVLQRIFNSRGVQNAEQLDRGLARLPSPWLLSGM
KAMAEHLLAALERQSKITVVADFDADGATSCALALKGLALLGAENLDFVVPNRFEYGYGL
TPEIVELVKRQQPDVILTVDNGISSIDGVKAAKAAGFTVLITDHHLPGAELPAADAIVNP
NLADDKFPSRNIAGVGVMFYILMALRIRLRETHWFEKRGIAEPNLAQLLDYAALGTVADV
VALDQVNRILVHQGLLRIRSGQCQPGIKALVEVAGKSLSGIHASDLGFAVAPRLNAAGRM
DDMTLGIQCLLTNDPSLARDIAEQLHALNQDRKEVEGQMKTEAMALLAEMKALDEQHVPA
GVCLFDANWHQGVIGILAARIKDRVHRPVIAFAPAENGDIKGSARSIAGVHVRDVLSDIA
ARHPQILTKFGGHAMAAGLTIKLHDYPHFALAFAETVAGKLENVDLQQKVYSDGELDERH
LTLEFAETLRQAAVWGQAFPEPEFNGVFDVIQCRIVGQQHLKFVLRLPFSGQMLDAIAFF
ADHPEKWLGCRKINAAYKLDINEFRGQRSLQLLLHYLEKLE
NT seq 1746 nt   +upstreamnt  +downstreamnt
atgtatctgcaaagcgttaaaaaagtcatcgttccacgccccgagttggtgaaaaatccg
catttcggcgaaatggacccggtgttgcaacggattttcaacagccgcggcgtgcagaat
gccgagcaactcgatcgcggtttggcgcggttgccgtcgccgtggttgttgtcgggtatg
aaggccatggccgaacacttgctcgctgccttggagcggcaaagcaaaatcaccgtggtg
gccgacttcgatgccgacggcgccaccagttgcgcgttggcgctgaagggattggctttg
ctgggggccgaaaatttggatttcgtggtcccgaaccgcttcgagtacggctacggtttg
accccggaaatcgtcgagttggtcaaacggcagcagccggacgtcattcttaccgtcgat
aacggcatctccagcatcgacggcgtcaaagccgcgaaagccgccggctttaccgtattg
attaccgaccaccatttgcccggcgcggaattgccggcagccgacgccatcgttaacccg
aacctggcggacgacaaatttcccagtcggaatattgcaggcgtcggcgtgatgttttat
atcctgatggcgttgcggatccggttaagggaaacccattggttcgaaaaacggggcatc
gccgaacccaatttggcccagcttctggattatgcggctttgggcacggtggccgacgtg
gtggcattggatcaggtcaaccggatactggtgcaccaggggctgctgcggattcgttcc
ggccaatgccagcccggcatcaaagccctggtggaagtagccggcaagtcgctgtcaggt
atacacgccagcgatttgggctttgccgtcgcgccgcgcttgaacgccgccgggcgcatg
gacgatatgaccttgggcatccagtgcctgttgaccaacgaccccagtttggcgcgggat
attgccgagcaactgcatgcgttgaaccaggaccgcaaggaagtcgaaggccaaatgaaa
accgaggccatggcgttactggccgaaatgaaggcgttggacgagcagcatgtgccggct
ggcgtctgtctgttcgacgcgaattggcaccagggggtgatcggcattctggcggcgcgg
atcaaggaccgcgtgcaccggccggtcatcgcgtttgcaccggccgagaacggcgatatt
aaaggttccgcccgttcgattgccggcgtgcacgtgcgcgacgtgctcagcgacatcgct
gcccggcatccgcagattctgactaaattcggcggccacgcgatggcggccggcttgacc
attaaactgcacgactatccgcattttgcgttagccttcgccgaaacggtggcaggtaag
ctggaaaacgtcgatttgcagcagaaagtttattccgacggcgaactcgacgagcgccat
ctgacgctggaattcgccgaaaccttgcgtcaggccgcggtgtggggccaagcctttccg
gagcccgaatttaacggcgtgttcgatgtgatccaatgccgcatcgtcggtcagcagcat
ttgaaattcgtattacggctgccgttcagcgggcaaatgttggatgcgattgccttcttt
gccgaccacccggaaaaatggctcggctgccgcaaaatcaacgcggcgtataagttggac
atcaacgagtttcgcggccagcgcagcctgcaattgttgttgcattatctggagaaattg
gagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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