KEGG T00043: mll9625

Mesorhizobium loti: mll9625

Entry

mll9625 CDS T00043

Gene name

ligD

Definition

ATP-dependent DNA ligase (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

mlo Mesorhizobium loti

Pathway

mlo03410	Base excision repair
mlo03420	Nucleotide excision repair
mlo03430	Mismatch repair
mlo03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:mlo03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:mlo03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:mlo03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:mlo03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S

Other DBs

NCBI-GI:

NCBI-GeneID:

RhizoBase:

UniProt:

Position

pMLb:complement(90698..93349)

AA seq 883 aa
MASDKLTTYKAKRDFKKTQEPSGQGSVKPSNRRRFVIQKHDATRLHYDLRLELGGVFKSW
AVTRGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGKNSPE
QALAKGDFKFTLEGERLHGSFVLVRMANDRERGKRTNWLLIKHRDEYAVETNGAAILDKN
DTSVASGRKMEAIAAGKGRSPKPFMLQGGKAEADAVWDSRTGLAAQERKTNIRAKRKKHG
TVTAADLPDFIAPQLCQTLARPPSESGWLHEIKFDGYRIQMRVLGGEAILQTRKGLDWTA
RYRAIARAAGNLPDAIIDGEICALDENGAPDFAALQAALAEGKTDALVYFAFDLLFEGAE
DLRVLPLSKRKARLRQFLTDTGEDDRIRFVEHFETGGEAVLRSACRLSLEGIVSKRADAP
YVSGRTETWAKSKCRAGHEVVIGAYATTNGKFRSLLVGVYRGDHFVYVGRVGTGYGAAKV
RDLLPKLKAAATRKSPFTGIGAPKNEPGVVWLKPELVAEIEFAGWTSDGLVRQAAFKGLR
EDKPAEEVEADKPASPEKTKVPQPREPTAAAKPSRSRGKVDVMGVLISNPDKPLWPDAND
GIPVTKEDLARYYEAVGPWLIEHIRGRPCSIIRAPDGFGGEQFFQRHAMPGTSNLLELVE
VFGDKKPYLQIDRVEGLAAVAQIGALELHPWNCEPQQPEVPGRLVFDLDPGPDVPFKTVV
EAAKEMRARLDDLGLVSFCKTTGGKGLHVVTPLAVTKRSKLTWPEAKGFAHDVCLQMARD
NPALYLTKMAKNQRIGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWAQVKTDLDP
KRFTLRTVPGLLAKSTAWKDYGDGHRLLEASIKRLARSMRRAA

NT seq 2652 nt +upstreamnt +downstreamnt
atggcgagcgacaagctaacaacatacaaggccaagcgcgatttcaagaagacgcaggag
ccgagcggtcaagggtcggtcaagccatccaaccgccgtcgtttcgtcattcagaaacat
gacgcgacgcggctgcattacgatctgcgacttgagctcggcggcgttttcaaatcctgg
gccgtgacgcgcggtccctctctcgatcctcatgacaagaggctcgcggtcgaggtggaa
gatcatccgctcgactacggggatttcgaagggacgattccaaaaggccagtatggcggc
ggcacggtcatgctgtgggaccgcggctattgggagcccgagggaaagaacagccccgag
caggcgctggccaagggcgatttcaaattcacgctcgaaggggagcggctgcatggcagt
ttcgtgctggtgaggatggccaacgaccgcgaacgcggcaagcgcaccaactggctgctg
atcaaacatcgcgacgaatatgccgtcgagacaaacggggctgcaatcctcgacaagaat
gacacctctgtcgcatccggacgcaagatggaggcaattgctgccggcaagggccgcagc
ccgaaacccttcatgctgcaaggcggcaaggccgaggcagatgcggtgtgggacagtcgt
acaggcttggcggcgcaggaacggaaaacaaacattcgcgcaaaaaggaagaagcacggg
actgtcactgccgccgatcttcccgacttcattgccccacagctctgccagacgctggcg
cggccgccctctgagagcggatggctgcacgagatcaagttcgacggctatcgcatccag
atgcgcgtcctgggcggcgaagctatcttgcagacccgcaagggtctcgactggaccgcc
agatatcgcgccattgcccgagccgccggcaatctgcccgatgcgatcatcgacggcgag
atctgcgcgcttgacgaaaacggcgccccggatttcgccgccctccaggcagcgctggcc
gagggcaagaccgatgcgcttgtctacttcgccttcgacctgctgttcgaaggcgctgag
gatttgcgtgtcttgccattgagtaagcgcaaggcgcgattgcgtcagtttctgaccgac
acgggtgaggacgatcgcatccgcttcgttgagcatttcgaaactggcggcgaggcagtg
cttcgctcggcctgccggctgtccttggaaggcatcgtttcgaagcgcgccgatgcgccc
tacgtttccggccgtaccgagacgtgggcgaagtcaaaatgtcgcgcaggccacgaggtc
gtcatcggcgcctatgccacaacgaatggcaaattccggtcgcttctggtcggcgtctat
cgcggcgatcacttcgtctatgtcgggcgcgtgggcacaggctatggcgcagccaaggtc
agggacctgctgccgaagttgaaagctgccgcgacccggaaatcacctttcaccggcatc
ggcgcgccaaagaacgaacccggcgttgtctggctgaagccggaactggtggccgagatc
gaattcgccggctggacgtccgacgggctcgtgcgccaagccgccttcaaaggcttgcgt
gaggacaaaccggccgaggaggtcgaagccgataagcctgcctcgccggaaaagaccaag
gtgccccagccgcgggagccgaccgcagcagccaagccttcccgcagccgcggcaaggtc
gatgtcatgggtgtgctgatctcgaatccggacaagccgctgtggccggatgccaatgat
ggcatccccgtaaccaaggaagatctcgcccgctattacgaagctgtcggtccctggctg
atcgagcacatccgcgggcggccctgctcaatcatccgcgcgccggatggattcggcggc
gagcagttcttccagcgtcatgcgatgccgggaacgtcaaatcttcttgaactggtggag
gtgttcggcgacaagaagccctacctacagatcgaccgtgtggagggtctcgccgccgtc
gcccagatcggtgcgctggaattgcatccctggaattgcgagccacagcagcccgaggtg
ccgggccggctcgtcttcgatcttgatccaggtcccgacgtcccgttcaaaacggttgtc
gaggcggctaaggaaatgcgcgcgcgcctcgacgatcttgggctcgtcagcttctgcaag
acgactggcggcaaagggctgcacgtcgtcacgcccttagcggtcaccaagcgcagcaag
ctcacctggccagaggcaaaagggtttgctcatgatgtctgcctgcagatggcgcgggac
aatcccgccctctacctgaccaagatggcgaagaaccagcgcatcggccgcatcttcctc
gactatctgcgcaacgatcgcatggcgaccgccgtggctccgctgtcgccgcgggccagg
cccggcgcgacagtctccatgccgctcacctgggcacaggtcaaaaccgatctcgatccg
aagcgcttcaccctgcgcaccgtgcccgggctgctggcaaagagcacggcctggaaggac
tatggcgatggccatcgcctcctggaagcatccatcaagcgactggcaagatcgatgcgg
cgggcggcctga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
   RHIZOBASE-MLO (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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