KEGG M.loti: mlr0276

Mesorhizobium loti: mlr0276

Entry

mlr0276 CDS M.loti

Gene name rpoB

Definition DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)

Orthology K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]

Pathway mlo00230 Purine metabolism
mlo00240 Pyrimidine metabolism
mlo01100 Metabolic pathways
mlo03020 RNA polymerase

Class Metabolism; Nucleotide Metabolism; Purine metabolism [PATH:mlo00230]
Metabolism; Nucleotide Metabolism; Pyrimidine metabolism
[PATH:mlo00240]
Genetic Information Processing; Transcription; RNA polymerase
[PATH:mlo03020]
Genetic Information Processing; Replication and Repair; DNA repair
and recombination proteins

SSDB

Motif Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2
RNA_pol_Rpb2_1 RNA_pol_Rpb2_45
PROSITE: RNA_POL_BETA

Other DBs NCBI-GI: 13470542
NCBI-GeneID: 1224773
RhizoBase: mlr0276
UniProt: Q98N66

Position 193431..197567

AA seq 1378 aa
MAQTQTFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVDEPKGGRPDEGLQAVFK
SVFPISDFSGSSMLEFVKYEFEGPKFDVDECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK
SIKDIKEQDVYMGDMPLMTLNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF
AARVIPYRGSWLDIEFDSKDVVHARIDRRRKIPVTSLLMALGMDGEEILSTFYNKITYVR
AGDHWRIPFNVERFRGLKAVGDLVDADTGEIVVEAGKKITARQARQLGEKGLKAIKATDE
DLLGNYLAEDIVNYATGEIFLEAGDEIDEKTLKVLLGTGEQEIKVLDIDHVNVGAYIRNT
LNVDKNESRQDALFDIYRVMRPGEPPTLETAEAMFNSLFFDSERYDLSAVGRVKMNMRLE
LKAEDTVRVLRKEDILAVVKTLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRVGLLR
MERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRL
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESP
YRKIVDGKLTNDVVYLSAMEEAKHHVAQANAELDKNGGFVDEFVICRSAGEVMMAPRENV
DLMDVSPKQMVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVAR
DSGAAIGARRGGIVDQVDATRIVIRATEDLDPGKSGVDIYRLMKFQRSNQNTCINQRPLV
RMGDRVNKGDIIADGPSTELGDLALGRNVLVAFMPWNGYNYEDSILLSERIVADDVFTSI
HIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTVVEVRVFNRHGVEKDERAMAIERE
EIERLAKDRDDEQAILDRNVYARLSDVLVGKEAIAGPKGFKKGSTLSKDTLDEYPRSQWW
QFAVENEKLQSELEALRGQYDDSKKALEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKR
KMQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLG
WACAGMGKKIGELIDTYKAAGDIKPLRKTLESFMPANDRNEPIREYDDESIVRLSEQMRR
GVSIATPVFDGAHEADINIMLEQAGLHTSGQSQLYDGRTGEPFDRKVTMGYIYMLKLHHL
VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
AGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELENTKLDDAPVRLPDAAE

NT seq 4137 nt +upstreamnt +downstreamnt
atggcccagacccagactttcaatggccgcagacgcgtacgcaagttcttcggaaagatt
ccggaagttgcggagatgccgaacctgatcgaggttcagaaggcatcctatgaccagttc
ctgatggtggacgagcccaagggcggccgtccggacgagggactgcaggctgttttcaag
tcggtcttcccgatctccgatttttccggctcctcgatgctggagttcgtgaagtacgag
ttcgaaggaccgaaattcgacgttgacgaatgccgtcagcgcgacctgacctatgccgcg
ccgctgaaggtgacgctgcgcctcatcgtgttcgatatcgacgaggataccggcgccaag
tcgatcaaggacatcaaggagcaggacgtctacatgggcgacatgccgctcatgaccttg
aacggcaccttcatcgtcaacggcaccgagcgcgtcatcgtctcgcagatgcaccgttcg
ccgggcgtcttcttcgaccacgacaaaggcaagtcgcactcgtcgggcaagcttctgttt
gccgcgcgcgtcattccctatcgcggctcgtggctcgacatcgagttcgattccaaggac
gtcgtgcacgcccgcatcgaccgccgccgcaagattccggtgacgtcgctgttgatggcg
ctcggcatggatggcgaagagatcctgtcgaccttctacaacaagatcacctatgtgcgc
gccggcgaccactggcgtattccgttcaacgtcgagcgtttccgcggcctcaaggccgtc
ggcgacctggtcgatgccgatacgggcgagatcgttgtcgaggccggcaagaagatcacc
gcccgtcaggcgcgccagctcggtgagaagggcctgaaggcgatcaaggcgaccgacgag
gatctgctcggcaactacctggccgaggacatcgtcaattacgccaccggcgagatcttc
cttgaagccggcgacgagatcgacgagaagaccctgaaggtgctgcttggcaccggcgag
caggagatcaaggttctcgacatcgaccacgtcaatgtcggcgcctatatccgcaacacg
ctcaacgtcgacaagaacgagagccgccaggacgcgctgttcgacatctatcgtgtcatg
cgcccgggcgagccgccgacgctcgagaccgccgaagccatgttcaactcgctgttcttc
gactcagagcgctatgacctgtcggctgtcggccgcgtcaagatgaacatgcgcctcgag
ctcaaggccgaggacaccgtgcgcgtgctgcgcaaggaagacatcctggccgtggtcaag
acgctggtcgaactgcgcgacggcaagggcgagatcgacgacatcgacaatctcggcaac
cgccgcgtgcgttccgtcggcgagttgatggagaaccagtaccgcgtcggcctgttgcgc
atggagcgcgcgatcaaggagcgtatgtcctcgatcgagatcgacacggtgatgccgcag
gacctgatcaacgccaagccggcggccgccgccgtgcgcgagttcttcggttcctcgcag
ctgtcgcagttcatggaccagaccaacccgctgtcggagatcacccacaagcgccgcctg
tcggcgcttggaccaggcggtctgacccgcgagcgcgccggcttcgaagtgcgcgacgtg
cacccgacgcattacggccgtatctgcccgatcgagacgccggaaggcccgaatatcggt
ctgatcaactcgctggccaccttcgcgcgcgtcaacaagtacggctttatcgagagcccg
taccgcaagatcgtcgatggcaagctgaccaatgacgtcgtctatctctcggcgatggaa
gaagccaagcaccatgtcgcgcaggccaacgccgagctcgacaagaatggcggcttcgtc
gacgagttcgtcatttgccgcagtgccggcgaagtgatgatggcgccgcgcgagaatgtc
gacctgatggacgtgtcgcccaagcagatggtgtcggtggccgcggccctgatcccgttc
ctggaaaacgacgacgccaaccgtgcgctgatgggctcgaacatgcagcgtcaggccgtg
ccgctggtgcgcgccgaggcgccgtttgtcggcaccggcatggagccgatcgttgcccgt
gactccggcgccgccatcggcgcccgccgcggcggcatcgtcgaccaggtggacgcgacg
cgtatcgttatccgcgcgacggaagatctcgatccgggcaagtccggcgtcgacatctac
cggctgatgaagttccagcgttcgaaccagaacacctgcatcaaccagcgtccgctggtg
cgcatgggtgaccgggtcaacaagggcgacatcatcgccgacggtccgtcgaccgagctc
ggtgatttggcgctcggccgcaacgtgctggtcgcgttcatgccgtggaacggctacaac
tacgaggactcgatcctgctctccgagcgcatcgtcgccgacgacgtcttcacctcgatc
cacatcgaggagttcgaggtcatggcgcgcgataccaagcttggtccggaggaaatcacc
cgcgacattccgaacgtttcggaagaagcgctgaagaacctcgacgaagccggcatcgtc
tatatcggcgcggaagtgcagccgggcgacatcctggtcggcaagatcacgccgaagggc
gagagcccgatgacgccggaagaaaagcttctgcgcgccatcttcggtgaaaaggcttcc
gacgtgcgcgacacttcgatgcgcatgcctccgggtactttcggcaccgtcgtcgaggtg
cgcgtgttcaatcgccacggtgtggagaaggacgagcgcgccatggcgatcgagcgcgag
gagatcgaacgcctcgccaaggaccgcgacgacgagcaggccattttggaccgcaacgtc
tacgcgcgtctttccgacgtgctcgtcggcaaggaagcgatcgctggaccgaagggcttc
aagaagggctcgacgctgtccaaggacacgctcgacgagtatccgcgttcgcagtggtgg
cagtttgccgtggagaatgaaaagctccagagcgaactggaagccctgcgtggccagtac
gacgactccaagaaggcgctcgaacagcgcttcatggacaaggtcgagaaggtgcagcgc
ggcgacgaaatgcctccgggcgtcatgaagatggtcaaggtcttcgtggcggtgaagcgc
aagatgcagccgggcgacaagatggccggccgtcacggcaacaagggtgtcgtgtcgcgc
atcgttccggtcgaggacatgcctttcctcgaggacggcacgcatgccgatatcgtgctc
aacccgctgggtgtgccgagccgcatgaatgtcgggcagatcctggaaacgcatctgggc
tgggcctgcgcgggcatgggcaagaagatcggcgagctgatcgacacctacaaggcggcg
ggcgacatcaagccgctgcgcaagacgctggaaagcttcatgccggccaatgaccgcaac
gagccgatccgcgagtatgacgacgagagcattgttcgcctcagcgagcagatgcgccgc
ggcgtctcgatcgcgaccccggtgttcgacggtgcgcacgaggctgacatcaacatcatg
ctggagcaggcgggcctgcacaccagcggtcagtcgcagctctatgacggacgcacgggc
gagccgttcgatcgcaaggtgacgatgggctatatctacatgctcaagcttcaccacctg
gtggacgacaagatccacgcgcgttcgatcggtccgtactcgctcgtcacccagcagccg
ctgggcggcaaggcgcagttcggtggccagcgcttcggcgaaatggaggtctgggcgctg
gaagcctacggcgccgcctacacgctgcaggaaatgctgacggtgaagtcggacgacgtc
gccggccgcaccaaggtctacgaggcgatcgtgcgcggcgacgacacgttcgaggccggg
attccggagagcttcaacgtgctcgtcaaggaaatgcggtctctcggcctcaatgtcgag
ctggagaacaccaagctcgacgacgcccctgtccggctgcccgacgcggccgagtaa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   RHIZOBASE-MLO (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (6)   
   PROSITE (1)   
All databases (22)

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