KEGG   Methanosarcina mazei S-6: MSMAS_2084
Entry
MSMAS_2084        CDS       T04532                                 
Name
(GenBank) putative exosome complex exonuclease 2
  KO
K12589  exosome complex component RRP42
Organism
mmj  Methanosarcina mazei S-6
Pathway
mmj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mmj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MSMAS_2084
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmj03019]
    MSMAS_2084
Messenger RNA biogenesis [BR:mmj03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     MSMAS_2084
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     MSMAS_2084
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-ProteinID: AKB65280
UniProt: A0A0E3RKR5
Position
complement(2617667..2618458)
AA seq 263 aa
MSEIIATLKKDYIYNLMIKDKRQDGRGFKDFRELKLETNVISKAEGSAKVTLGNTQVLVG
VKLQTGTPFPDSQDEGVIITNLELNPIASPEFEPGPPREDAIEMARVVDRGIRESGAIDI
KKLCITVGESVWIVFIDVHILNNDGNIIDASCLAAIAALMTTMVPNEQQGLGENVPLAMK
EMPVGITLAKIGSKLMVDPSLDEEAVCETKLTIVSSSDGSVAGMQKMGPVPLTEAELFEA
IDMAIEKAAEIRGLYLEGLAKSE
NT seq 792 nt   +upstreamnt  +downstreamnt
atgagtgaaatcatagccacacttaagaaggattatatttacaacctgatgatcaaagat
aagcgccaggacggtcgcggctttaaagatttcagggaactcaaactcgaaacaaatgtt
atctccaaagcagaaggttctgcaaaggtcaccctcggaaacactcaggtgcttgtaggt
gtgaaacttcagactggaaccccgttcccggattcccaggacgaaggcgtgatcattacc
aaccttgagcttaaccccatagcttctcctgagtttgagcccgggccaccgagagaagat
gcaatcgaaatggcaagggtcgttgacagggggatcagggaatcaggcgcaattgatata
aagaagctctgcataacggttggagaatccgtctggattgtctttatagacgtccatatc
ctgaataacgacggaaatatcattgatgcatcctgtctcgctgcaattgcagccctcatg
accaccatggtcccgaacgagcagcagggacttggcgagaacgtgccccttgctatgaaa
gagatgcctgtcggcataacacttgccaagatcggctcaaaacttatggttgacccctcg
cttgatgaggaagcagtctgcgaaacgaaactgacaatagtttcaagttctgacgggtct
gttgcaggcatgcagaaaatgggtcctgtcccccttacagaggcagagctcttcgaagct
atagatatggcaattgaaaaggcagccgaaatccgcgggctctaccttgaagggctcgca
aaaagtgaataa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (10)   

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