KEGG   Mus musculus (house mouse): 13990
Entry
13990             CDS       T01002                                 
Symbol
Smarcad1, D6Pas1, Etl1, etl-1, mKIAA1122
Name
(RefSeq) SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
  KO
K14439  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 [EC:5.6.2.-]
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu04550  Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04550 Signaling pathways regulating pluripotency of stem cells
    13990 (Smarcad1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:mmu03036]
    13990 (Smarcad1)
Chromosome and associated proteins [BR:mmu03036]
 Eukaryotic type
  Chromatin remodeling factors
   Other chromatin remodeling factors
    13990 (Smarcad1)
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C ResIII DEAD HDA2-3 ERCC3_RAD25_C CUE Pox_D5
Other DBs
NCBI-GeneID: 13990
NCBI-ProteinID: NP_031984
MGI: 95453
Ensembl: ENSMUSG00000029920
UniProt: Q04692
Position
6:65019577..65093045
AA seq 1021 aa
MNLFNLDRFRFEKRSKIEEAPEAAPQPSQARPSSPISLSAEEENAEGEGSRANTPDSDVT
EKTEDSSVPEPPDNERKASLSCFQNQRAIQEYIDLSSDTEDVSPNCSSTVQEKKFSKDTV
IIVSEPSEDEESHDLPSVTRRNDSSELEDLSELEDLKDAKLQTLKELFPQRSDSDLLKLI
ESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEEDDVNDDQSVKQPRGDRGEESNESAE
ASSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDVQCASQS
EVTNGKEVARNQNYSKNATKIKMKQKISVKPQNGFNKKRKKNVFNPKKAVEDSEYDSGSD
AGSSLDEDYSSCEEVMEDGYKGKILHFLQVSSIAELTLIPKCSQKKAQKITELRPFNNWE
ALFTKMSKINGLSEDLIWNCKTVIQERDVVIRLMNKCEDISNKLTKQVTMLTGNGGGWNR
EQPSLLNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLFQEGNK
GPHLIVVPASTIDNWLREVNLWCPSLNVLCYYGSQEERKQIRFNIHNKYEDYNVIVTTYN
CAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINARNRLLLTGTPVQNNLL
ELMSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIYEKERIAHAKQIIKPFILRRVKE
EVLKLLPPKKDRIELCAMSEKQEQLYSGLFNRLKKSINNLEKNTEMCNVMMQLRKMANHP
LLHRQYYTPEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYQHINSYQL
DMDLILDSGKFRALGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQ
ISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHR
VGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEADEGSMPADIATLLKTSMG
L
NT seq 3066 nt   +upstreamnt  +downstreamnt
atgaatcttttcaacttggaccgttttcgctttgagaaaaggagtaagattgaggaagca
cccgaagcagcccctcagccctcccaggcccgtccttcgtcaccaatttctcttagtgct
gaagaggagaatgctgaaggggaaggtagcagggcaaacaccccagactcagatgtaact
gagaaaacagaagattctagtgttccagaaccgccagacaatgaaagaaaagcaagttta
tcatgtttccaaaatcaaagagcaatacaggaatatattgatttatcatctgatactgaa
gatgtttctccaaattgttccagtacagttcaagagaaaaaattcagcaaagacacagtg
attatagtttcagagccatctgaagatgaagaatcccatgaccttccttctgttacacga
agaaatgacagttcagaactggaagacctttcagaattggaagatcttaaagatgctaag
cttcagacattgaaggaactgtttccacaaagaagtgacagtgatcttctaaagttgatt
gaatcaacaagcactatggatggagccattgctgctgccttgctgatgtttggtgatgca
ggtggtggacccaggaaaaggaaattatcttcttcttctgaggaggatgacgttaatgat
gatcagtctgtaaaacagccgcgaggggaccgtggagaagaatcaaatgagtctgcagaa
gccagcagcaactgggaaaagcaagaaagtattgtgttgaaattgcaaaaggaatttcca
aattttgataaacaggaattaagagaagtgcttaaggagcatgagtggatgtacacagaa
gccttggagtctctgaaagtgtttgcggaagatcaagacgtgcagtgtgcttcacaaagt
gaagttacaaatggaaaagaagttgcaaggaatcaaaattattctaaaaatgcaactaaa
ataaaaatgaaacagaaaatttccgtgaaaccacaaaatggctttaacaagaaacgtaag
aaaaatgtatttaatcctaagaaagccgtagaggactctgagtacgattcaggttctgat
gctgggagctcactggatgaggactatagcagttgtgaagaagtgatggaggacggctat
aaaggcaaaattcttcatttccttcaagtttcttcaattgctgaactgactttgattcct
aagtgttctcagaaaaaggctcagaaaataacagaactccggccctttaataattgggaa
gctctgtttacaaagatgtctaaaatcaatggcctatctgaagatttgatatggaattgc
aaaacggtaattcaagaaagggacgtagttataagacttatgaacaaatgtgaggacatt
tcaaataaactgaccaaacaagttacgatgctcaccgggaatggaggcggatggaacaga
gaacagccctcccttctaaaccaaagtttgtcactcaagccctatcagaaggttgggttg
aactggctggcgttggtgcataagcatggacttaatggcattctggcagacgaaatgggc
ctaggaaaaaccattcaagccattgcattcctggcatacctctttcaagagggtaataaa
gggcctcatttgattgttgttccagcctccaccatagataactggttaagagaagttaac
ttatggtgccccagtttaaatgtgctctgttactatggttctcaagaagagcgtaagcaa
attagattcaacatccataataagtatgaggattacaatgtaattgttacaacgtataat
tgtgcaatcagcagctctgatgaccgcagtctctttcgacgactgaaactgaattatgca
atttttgatgaaggccatatgctgaagaatatgggctctatccgctatcaacatctaatg
acaattaatgcacgtaaccgtttattgctcacaggcacacctgtgcagaataatctgcta
gaactcatgtcattgttgaattttgttatgccacacatgtttagcagtagcaccagtgaa
atccgaaggatgttttcttctaaaacgaaaccagcagacgagcagagtatatacgaaaag
gagagaatagcccacgcgaagcaaatcattaagcccttcatcctcaggagagtgaaggag
gaggttcttaagctcctgcctcccaagaaggatcggattgagctatgtgcgatgtcagag
aagcaggagcagctctactcgggcctcttcaacagattgaaaaagtctatcaacaacctg
gaaaaaaacacagagatgtgcaatgtcatgatgcaattgagaaaaatggccaatcaccct
ttactacaccgccagtattacacacctgagaaactgaaggagatgtctcagctaatgctg
aaggaacctacgcactgtgaggccaaccctgacctgatctttgaagacatggaagttatg
acagattttgaactacatgtactttgtaaacagtatcaacacattaatagttaccagtta
gacatggatttaattttagattctgggaaattccgagccttaggatgcatcttgtctgag
ttgaaacagaagggtgatagagttgtattattcagccagtttaccatgatgctggatata
ctagaggttctcttaaagcatcatcaacataggtacctccgattagatggaaagactcag
atttctgaaaggattcatctaattgatgagtttaatacagatatggatatctttgtattt
ctcttgtcaactaaagctggtggactaggaataaatcttacttcagcaaatgttgttata
cttcacgacattgattgcaatccatacaatgacaaacaagcagaagacaggtgccataga
gttggtcagactaaagaagtattagttattaaattaataagccaaggaactattgaagag
tccatgctaaaaattaaccaacaaaagttgaaactagagcaagacatgaccacagtagat
gaagctgatgaaggaagtatgccagcagatatagccacattactaaaaacatcaatgggc
ctgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (2)   
   OC (1)   
Protein sequence (15)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (13)   
DNA sequence (35)   
   RefSeq(nuc) (15)   
   GenBank (10)   
   EMBL (10)   
Protein domain (8)   
   Pfam (8)   
All databases (86)   

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