KEGG   Mus musculus (house mouse): 20592
Entry
20592             CDS       T01002                                 
Symbol
Kdm5d, H-Y, HY, Jarid1d, Smcy
Name
(RefSeq) lysine demethylase 5D
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
mmu  Mus musculus (house mouse)
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:mmu01009]
    20592 (Kdm5d)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:mmu03036]
    20592 (Kdm5d)
Enzymes [BR:mmu01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     20592 (Kdm5d)
Protein phosphatases and associated proteins [BR:mmu01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     20592 (Kdm5d)
Chromosome and associated proteins [BR:mmu03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    20592 (Kdm5d)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel ARID zf-C5HC2 JmjN PHD ASH2L-like_WH
Other DBs
NCBI-GeneID: 20592
NCBI-ProteinID: NP_035549
MGI: 99780
Ensembl: ENSMUSG00000056673
UniProt: Q62240
Position
Y:897566..946316
AA seq 1548 aa
MKPGSDDFLPPPECPVFEPSWAEFRDPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVEV
DNFRFTPRIQRLNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERKILDLYSLNKIVM
EEGGYEAICKDRRWARVAQRLNYPSGKNIGSLLRSHYERIIYPYEIFQSGANLVQCNTDP
FDSEERDKEYKPHSIPLRQSVQPSKFSCYSRRGKRLQPEPEPTEEDIEKNPELKKLQIYG
AGPKMIGLGLKAKEKTLRKKDSKQPDKEEVTCPATIVVKGEASEFGKVTSAFSDKNLNHS
FEPCMKMTMQLRNNHSSTQFMNSYVCRICSRGDEVDKFLLCDGCSDNYHIFCLLPPLSEV
PKGVWRCPKCILAECKSPPEAFGFEQATQEYTLQSFGEMADSFKADYFNMPVHMVPTEVV
EKEFWRLVSSIEEDVTVEYGADIHSKEFGSGFPVNNSKWDLSPEEKEYAACGWNLNVMPV
LDQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLA
AEHLEDVMKRLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAY
HSGFNQGYNFAEAVNFCTADWLPVGRQCIEHYRRLRRYCVFSHEELICKMAAFPEKLDLN
LAVAVHKEMFIMVQEERRLRKTLLEKGITEAEREAFELLPDDERQCIKCKTTCFLSALAC
YDCPDSLVCLSHINDLCKCSRNRQYLRYRYTLDELPAMLQKLKIRAESFDNWANKVQAAL
EVEDGRKRSFEELRALESEARDRRFPNSELLQRLKKCLTEAEACISQVLGLISNSEDRLQ
TPQITLTELQLLLKQMGTLPCTMHQIDEVKDVLQQVESYQIETREALTSLPYSLEILQSL
MEKGQQLRVEVPEAHQLEELLEQAQWLDQVKQALAPSGQRHSLVIMKKLLVMGTKVASSP
SVNKARAELQELLTIAECWEEKAHFCLKASQKHSPATLEVIIREAENIPVYLPNIQSLKE
ALTKAQAWIADVNEIQNGDHYPCLDDLEGLVAVGRDLPVELEELRQLENQVLTAHSWKEK
ASKTFLKKNSCYTLLEVLCPCADAGSVSTKRSRWIEKEMGLYKYDTELLGLSAQDLRDPG
SVIMAFKEGEEKEKEGILHLRHINSAKPSPMSSSMNASATSICICGQVCAGVESLQCDLC
HDWFHGQCVTVPHLLSSVRASHTSSQLLAWWEWDTKFLCPLCMRSRRPRLETILSLLVGL
QRLSVRLPEGEALQCLTERAIGWQGRARQALASEDVTALLKQLEKSRQQLQDELRHKKPP
TLPSGFAFDCLTENSGKDILKEEEELVLNEERIKSSEKIVPKESSCKGDKELLPSLLSQL
TGPVLELPEATRAPLEELMMEGDLLEVTLDENYSIWQLLQAGQNPNLERIHTLLELEKPE
NPGNWSEEQTPERRRQRRQKVVLSRKGEDFTQKELESKRVKSSRIKPKEEKFQKPILGDN
VLYTHHTEHTNILKEHINSVQGKDPSPSSSFPSLTPLLHLSYFHQQKL
NT seq 4647 nt   +upstreamnt  +downstreamnt
atgaagccaggatctgacgactttctaccgccgcctgagtgccctgtgtttgagcccagt
tgggcggaattccgcgatcctcttggctatatagctaaaatcagacccattgcggagaaa
tcaggcatttgcaagatacgcccacctgcggattggcaacctccttttgctgtagaagtt
gataacttcagatttactcctcgaattcagaggctaaatgaactggaggcccagaccaga
gtaaaactgaactatttggatcagattgcaaagttctgggaaattcaaggttcttcctta
aagatacctaatgtggagaggaagatcttggacctttacagccttaataagattgtgatg
gaggaaggtggatatgaagcaatctgcaaggaccgtcggtgggcccgtgttgcccaacgc
cttaattacccatcagggaaaaacattggttccctgcttcggtcccactacgaacggatc
atttacccttatgaaatatttcagtctggagctaatcttgtgcaatgtaacacagatcca
tttgacagtgaagaaagagacaaggaatacaaacctcatagcattcctcttagacagtct
gttcagccatcaaaattcagttgctacagtagacgaggaaaaaggctacagcctgagcca
gaacccacagaagaagacattgagaaaaacccagagctaaagaaactacagatatatggg
gcaggccccaagatgataggcttgggcctcaaggctaaggagaaaactctgagaaagaaa
gatagcaaacaaccagataaagaagaagtgacatgccctgcaactattgtagtgaagggg
gaagccagtgagtttggaaaggtgacatcagcattttcagacaagaacttaaatcacagt
tttgaaccttgtatgaagatgactatgcagctacggaacaatcacagcagtacccagttt
atgaattcatatgtttgccgaatatgctctcgtggggatgaagtcgataagtttctgctc
tgtgatggctgcagtgataattaccacatcttttgcctattgccaccgctttctgaagtc
cccaagggagtatggagatgcccgaagtgtatcttagcagagtgtaagagtccccctgaa
gcttttggctttgagcaggctacacaggagtatactttgcagagttttggtgagatggct
gactccttcaaggctgactacttcaacatgcctgtgcatatggtacctacagaagttgtg
gaaaaggaattctggaggctggtgagcagcattgaggaggatgtgacagttgaatatgga
gcagacattcactccaaagaatttggcagtgggtttcctgtcaacaatagcaaatgggac
ttatctcctgaagaaaaggaatatgctgcttgtggttggaatctcaatgtgatgccagtg
ctggatcagtctgttctctgccacatcaatgcagacatctcaggcatgaaagtgccctgg
ttatatgtgggcatggtgttttcagcattttgttggcatattgaggatcactggagttat
tccattaactacctgcactggggtgaaccaaagacctggtatggagtaccttcgctagca
gcagaacacttagaggatgtaatgaagagacttacaccagagttgtttgacagccaacct
gacctcctgcaccaacttgtcactctgatgaatcctaacactctcatgtcacatggagtg
ccagttgttcgtacaaaccagtgtgcaggggaatttgtcattacttttccccgtgcttac
cacagtggctttaaccaaggctataactttgctgaggcagtgaacttttgcactgccgat
tggctacctgttggacgccagtgtattgaacactaccgccgactccggcgctattgtgtc
ttctcccatgaagaacttatctgcaagatggctgcatttccagagaagttggatctaaat
ctagcagtggcagttcacaaggagatgttcattatggtacaggaggagcgacgcctacga
aagaccttgttggagaagggcatcacggaagctgagcgagaggcttttgagctactccca
gatgatgagcgtcagtgcatcaagtgtaagaccacgtgtttcctatcagccttggcctgt
tatgactgtccagatagtcttgtctgcctttcccatatcaatgatctgtgcaagtgctca
aggaatcgacagtacttacggtacaggtacacattggatgaactgcctgctatgctacaa
aagctgaagattcgagctgagtcatttgacaactgggccaacaaagtacaagcagcccta
gaggtggaggatggtcggaaacggagttttgaagagctaagagcattggaatctgaggct
cgtgatagacgatttcctaatagtgagctgcttcagcgattgaagaaatgcctaactgaa
gcagaggcttgtatttcccaagttcttggactgatcagtaactcagaggacaggttacaa
acaccgcaaatcacccttactgaactacagcttcttctcaaacagatgggcactctgccc
tgtaccatgcatcagattgatgaagttaaggatgttcttcaacaggtggaatcataccaa
attgagacccgtgaggctctaacttcactgccttacagtttagaaatacttcagtccctg
atggaaaagggtcagcagcttcgtgtggaagtgcctgaagctcatcaacttgaagagctg
ttggagcaggcacaatggctagatcaagtgaagcaggccctggctccctcaggccagagg
cactctttggttatcatgaagaagcttttagttatgggaaccaaggtagcctccagccct
tctgtgaacaaagctcgagcagagttacaagaactgctgactattgcagaatgttgggag
gaaaaggcccatttttgcttaaaagctagccaaaagcattctccagccactttggaagtt
ataatacgtgaggcagaaaacatccctgtctacctacctaacatccagtctctgaaggaa
gctctgactaaggcacaggcttggattgctgatgtgaatgagattcaaaatggtgatcac
tacccctgtttggatgatttggagggccttgtagctgttggtcgggatttacctgtggag
ctagaggaattgagacagctggagaatcaggtactaacagcacattcctggaaagagaaa
gcttctaagacttttcttaagaagaattcttgctacacattgttggaggttctctgccca
tgtgcagatgctggttcagtcagcaccaagcgcagtcggtggattgaaaaggagatggga
ttatacaaatatgacacagaattgctggggctgtctgcacaggacctcagggacccaggg
tctgtgatcatggcctttaaggaaggggaagagaaagaaaaggaaggtatcttgcactta
cgtcacatcaactcagccaagcccagtccaatgtcctcatcgatgaatgcctctgcaacc
tccatctgtatatgtgggcaggtctgtgcaggagtggaatctctgcagtgtgatctttgt
catgactggttccatggacaatgtgtgactgtaccccacctactcagctcagtaagggcc
agtcatacctcatctcaactgctagcttggtgggaatgggacaccaagttcctgtgccca
ctgtgcatgcgatcaaggcgtccacgcctggagaccatcttgtcattgctggtaggacta
cagagactgtctgtaaggctacctgagggtgaggccctacagtgcctcacagagagagcc
attggttggcaaggccgtgccaggcaggctctagcttctgaggatgtgactgctttgttg
aaacagctggaaaaatcccgccaacaactacaggatgaattgagacataagaagccccct
accttgccttcaggctttgcctttgactgtctcacagagaatagtggcaaggatatcctt
aaggaagaggaggagttggtactaaatgaagaaaggattaaaagttctgagaagattgtt
ccaaaggaaagttcatgtaaaggagataaggaactgctgccttcacttttatcccaatta
actggcccagtactggaactgcctgaagccacccgggcacccctagaggagcttatgatg
gaaggagatctacttgaagttaccctagatgagaactacagcatttggcagctgctgcag
gctgggcagaatcccaatctagagcgcattcatacacttctggagcttgagaagcctgaa
aacccaggaaattggtcagaggaacagacaccagagaggcgacggcagaggaggcaaaag
gtggttctgagtagaaagggtgaggattttactcaaaaagagctagaatcaaaaagagtc
aagagttcaaggattaagcctaaggaagaaaagtttcaaaagccaatacttggggataat
gtgctgtacacacaccatacagaacatacaaacatcttaaaagagcacataaacagtgta
caaggaaaggatccaagcccttcatcttcttttccttccttaacacctttactacaccta
tcttattttcatcagcaaaaattataa

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