KEGG   Mus musculus (house mouse): 53611
Entry
53611             CDS       T01002                                 
Symbol
Vti1a, 1110014F16Rik, 1110018K19Rik, 4921537J05Rik, MVti1, MVti1a, Vti1, Vti1-rp2
Name
(RefSeq) vesicle transport through interaction with t-SNAREs 1A
  KO
K08493  vesicle transport through interaction with t-SNAREs 1
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu04130  SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04130 SNARE interactions in vesicular transport
    53611 (Vti1a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:mmu04131]
    53611 (Vti1a)
Membrane trafficking [BR:mmu04131]
 SNARE
  SNAP-25[N] (Qb)
   Vti1
    53611 (Vti1a)
SSDB
Motif
Pfam: V-SNARE V-SNARE_C Sec20 LMBR1 Fusion_gly Mer2 Peptidase_S46 DUF5344 Cir_Bir_Yir FapA Orf78 BPS1
Other DBs
NCBI-GeneID: 53611
NCBI-ProteinID: NP_058558
MGI: 1855699
Ensembl: ENSMUSG00000024983
UniProt: O89116 Q5FWJ7
Structure
Position
19:55304489..55615893
AA seq 217 aa
MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVR
EIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDEVRNELLGDAGNSSENQRAHLLD
NTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARDRLRDADANLGKSSRI
LTGMLRRIIQNRILLVILGIIVVIAILTAIAFFVKGH
NT seq 654 nt   +upstreamnt  +downstreamnt
atgtcttccgacttcgaagggtacgagcaggacttcgcagtgctcactgctgagatcacc
agcaagattgcaagggtccctcggctccctcccgatgagaagaagcaaatggttgccaat
gtggagaaacagcttgaagaggccagagaactgcttgaacagatggatttggaagttcga
gaaattccaccccaaagtcgaggaatgtatagcaacaggatgagaagctacaagcaagaa
atggggaaactggaaacggattttaaaaggtcacggatcgcctacagtgacgaagtacgg
aatgagctcctaggggatgctgggaattcctccgagaaccagagggcacatctgctggat
aacacggagaggctggaaaggtcgtctcggagactagaggctgggtaccagatagcagtg
gagactgagcaaatcggccaagagatgttggaaaacctgagtcatgacagagaaaagata
cagcgggcacgtgaccgactccgggacgcagatgcaaacctggggaagagctctcggatt
ctgacggggatgctgcgaagaatcatccagaaccgtatcctgctcgtcatcttggggatc
atcgtggtcatcgccatcctgacggccatcgcgtttttcgtcaaaggacactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (1)   
   OC (1)   
Protein sequence (23)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (20)   
DNA sequence (58)   
   RefSeq(nuc) (20)   
   GenBank (19)   
   EMBL (19)   
3D Structure (1)   
   PDB (1)   
Protein domain (12)   
   Pfam (12)   
All databases (111)   

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