KEGG   Mus musculus (house mouse): 66923
Entry
66923             CDS       T01002                                 
Symbol
Pbrm1, 2610016F04Rik, BAF180, Pb1
Name
(RefSeq) polybromo 1
  KO
K11757  protein polybromo-1
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03082  ATP-dependent chromatin remodeling
mmu05225  Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    66923 (Pbrm1)
 09160 Human Diseases
  09162 Cancer: specific types
   05225 Hepatocellular carcinoma
    66923 (Pbrm1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mmu03021]
    66923 (Pbrm1)
   03036 Chromosome and associated proteins [BR:mmu03036]
    66923 (Pbrm1)
Transcription machinery [BR:mmu03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     66923 (Pbrm1)
Chromosome and associated proteins [BR:mmu03036]
 Eukaryotic type
  Chromatin remodeling factors
   PBAF complex
    66923 (Pbrm1)
SSDB
Motif
Pfam: Bromodomain BAH HMG_box HMG_box_2
Other DBs
NCBI-GeneID: 66923
NCBI-ProteinID: NP_001074720
MGI: 1923998
Ensembl: ENSMUSG00000042323
UniProt: F8VQD1
Position
14:30741095..30843549
AA seq 1704 aa
MGSKRRRATSPSSSVSGDFDDGHHSVPTPGPSRKRRRLSNLPTVDPIAVCHELYNTIRDY
KDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLF
NNAKAYYKPDSPEYKAACKLWDLYLRTRNEFVQKGEADDEDDDEDGQDNQGTLADGSSPG
YLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNG
SYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFYMKKAEIEHHEMTKSSLRIR
TASNLAAARLTGPSHNKSSLGEERNPTSKYYRNKRAVQGGRLSAITMALQYGSESEEDAA
LAAARYEEGESEAESITSFMDVSNPFHQLYDTVRSCRNHQGQLIAEPFFHLPSKKKYPDY
YQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQVM
QAKKKELARRDDIEDGDSMISSATSDTGSAKRKRNTHDSEMLGLRRLSSKKNIRKQRMKI
LFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEG
MMEDMKLMFRNARHYNEEGSQVYNDAHILEKLLKDKRKELGPLPDDDDMASPKLKLSRKS
GVSPKKSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMD
MEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVLHKVLLETRRDLEG
DEDSHVPNVTLLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVDPNSPNKPPLTFDII
RKNVESNRYRRLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQFFIRIRDELCKNGEI
LLSPALSYTTKHLHNDVEKEKKEKLPKEIEEDKLKREEEKREAEKSEDSSGTTGLSGLHR
TYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETF
HLATRKFLEKEVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVFVCESRYSA
KTKSFKKIKLWTMPISSVRFVPRDVPLPVVRVASVFANADKGDDEKNTDNSDDNRAEDNF
NLEKEKEDVPVEMSNGEPGCHYFEQLRYNDMWLKVGDCVFIKSHGLVRPRVGRIEKVWVR
DGAAYFYGPIFIHPEETEHEPTKMFYKKEVFLSNLEETCPMSCILGKCAVLSFKDFLSCR
PTEIPENDILLCESRYNESDKQMKKFKGLKRFSLSAKVVDDEIYYFRKPIIPQKEPSPLL
EKKIQLLEAKFAELEGGDDDIEEMGEEDSEVIEAPSLPQLQTPLANELDLMPYTPPQSTP
KSAKGSAKKESSKRKINMSGYILFSSEMRAVIKAQHPDYSFGELSRLVGTEWRNLETAKK
AEYEERAAKVAEQQERERAAQQQQPSASPRAGTPVGALMGVVPPPTPMGMLNQQLTPVAG
MMGGYPPGLPPLQGPVDGLVSMGSMQPLHPGGPPPHHLPPGVPGLPGIPPPGVMNQGVAP
MVGTPAPGGSPYGQQVGVLGPPGQQAPPPYPGPHPAGPPVIQQPTTPMFVAPPPKTQRLL
HSEAYLKYIEGLSAESNSISKWDQTLAARRRDVHLSKEQESRLPSHWLKSKGAHTTMADA
LWRLRDLMLRDTLNIRQAYNLENV
NT seq 5115 nt   +upstreamnt  +downstreamnt
atgggttccaagagaagaagagccacctctccttccagcagtgtcagtggagactttgat
gacgggcaccattctgtgcctacaccaggcccaagcaggaaaaggagaagactgtccaat
cttccaactgtagatcctattgctgtgtgccatgaactctataacaccatccgagactat
aaggatgaacagggcagactcctctgtgagctgttcattagggctccaaagcggagaaat
caaccagactattatgaagtggtttctcagcccattgacttgatgaaaatccaacagaaa
cttaaaatggaagagtatgatgatgttaatctactgactgctgacttccagctgcttttt
aacaatgcaaaggcctactataagccagattcccctgagtataaagctgcttgtaaactc
tgggatttgtaccttcgaacaagaaatgagtttgttcagaaaggagaagcagacgatgaa
gatgatgacgaagatgggcaagacaatcaaggcacactggctgacggctcttctccaggt
tatctgaaggagatcctggagcagcttcttgaagccatagttgtagccacaaatccatca
ggacggctcatcagtgaactttttcagaaactgccttccaaagtgcaatatccagactat
tatgcaataattaaggaacctatagatctcaagaccattgctcagaggatacagaatgga
agctacaaaagtatacacgcaatggccaaagatatagatcttctagcaaaaaatgccaaa
acatacaatgagcctgggtctcaagtattcaaggatgccaattcgattaaaaaaatattt
tatatgaaaaaggcagaaattgaacatcatgaaatgactaaatcaagtcttcgaataagg
actgcatcaaatttggctgcagccaggctgacaggtccttcgcacaataaaagcagcctt
ggtgaagaaagaaaccccactagcaagtattaccgtaataaaagagcagtccaagggggt
cgcttgtcagcaattaccatggcacttcagtatggatcagagagtgaagaggacgctgct
ttagctgctgcacgctatgaagaaggggaatctgaagcagagagcatcacttccttcatg
gacgtttccaacccctttcatcagctttacgacacagttaggagctgtaggaatcaccaa
gggcagctcatagctgaacctttcttccatttgccttcaaagaaaaaatacccagattat
tatcagcaaattaaaatgcccatatcacttcaacagatcagaacaaagctaaagaaccaa
gaatatgaaactttagatcatttggagtgtgatctgaatttaatgtttgaaaatgccaaa
cgttataacgttcccaattcagccatctataagcgagttctaaaactgcagcaagtcatg
caggcaaagaagaaggagcttgcgaggagagatgacattgaggacggagacagcatgatc
tcctcagccacttctgacactggtagtgccaaaaggaaaaggaatactcatgacagtgag
atgttgggtctcaggaggctatccagtaaaaagaacataagaaaacagcgaatgaaaatt
ttattcaatgttgttcttgaagctcgagagccaggttcaggcagaagactttgcgatcta
tttatggttaagccatccaagaaggactatcctgattattataaaatcatcttagagcca
atggacctgaaaataattgagcataacatccgaaatgacaaatatgcaggtgaagaagga
atgatggaagacatgaaactcatgttccgcaatgccaggcactacaatgaggagggctcc
caggtatacaatgatgcccatatcctggagaagttactcaaagataaaaggaaagagctg
ggccctctgcctgatgatgatgacatggcttctcccaaacttaaattgagtaggaagagt
ggtgtttctcctaagaaatcaaagtacatgactccaatgcagcagaaactgaatgaagtg
tatgaagctgtaaagaactatactgataagaggggtcgccgccttagtgctatatttcta
agactcccctctagatcagagctgcctgactactacctgaccattaaaaagcccatggac
atggaaaaaattcgaagtcacatgatggcaaacaagtaccaagacatagattctatggta
gaggactttgtcatgatgtttaataatgcctgtacctacaatgaaccagagtctttgatc
tacaaagatgcccttgtactgcataaagtcctccttgagactcggagagacctggaggga
gatgaggattctcatgtccctaatgtgacgttgctgattcaagagctcatccataacctt
tttgtgtcagtcatgagtcatcaggatgacgaagggaggtgttacagcgactccttagca
gaaattcctgctgtggatcccaactctcccaataaacctccccttacatttgacattatc
aggaaaaatgttgaaagtaatcggtatcggcgacttgatttatttcaggagcatatgttt
gaagtattggaacgggcaagaaggatgaaccggacagattccgaaatatatgaggatgct
gtagaacttcagcagttttttattagaattcgtgatgaactctgcaaaaatggagagatc
cttctttctccagcactcagctataccacaaaacacttgcataacgatgtggaaaaagaa
aaaaaggaaaaattgcctaaagaaatagaggaagataaactaaaacgcgaagaagaaaaa
agagaagctgaaaaaagtgaagattcctcaggtactacaggcctctcaggcttacatcgt
acatacagccaggactgcagctttaagaacagcatgtatcatgtcggagattatgtctat
gttgaacctgcggaggccaatctacaaccacatatagtgtgtattgagagactgtgggag
gattcagctggtgaaaaatggttgtacggctgttggttttatcggccaaatgaaacattc
catttggctacacgaaaatttctagaaaaagaagtttttaagagtgactactacaataaa
gtacctgttagtaaaattctaggcaaatgtgtagtcatgtttgtcaaggaatactttaaa
ttatgtccagaaaactttcgcgatgaggatgtttttgtctgtgaatcgaggtattctgcc
aaaaccaaatcttttaagaaaattaaactgtggaccatgcccatcagttcagttagattt
gtccctcgggatgtgcctttgcctgtggtccgagtggcctctgtgtttgcaaatgcagat
aaaggggatgatgagaagaatacagacaactcagatgacaatagagctgaagacaatttt
aacttggaaaaggaaaaagaagatgttcctgtggagatgtccaatggtgagccaggttgc
cactactttgagcagcttcggtacaatgacatgtggctgaaggttggtgattgtgtcttc
atcaaatcccacggcttggtgcgccctcgtgtgggcagaattgagaaagtatgggtccga
gatggagctgcatatttttatggccctatcttcattcatccagaagaaacagaacatgag
cccacaaaaatgttctacaaaaaagaagtgtttctgagtaatctggaagagacctgccct
atgagttgtattctggggaaatgtgcagtgctgtcattcaaggacttcctctcctgcagg
ccaactgaaataccagaaaatgacattctgctttgtgagagccgctataatgagagtgac
aagcagatgaagaagttcaagggtttgaagaggttttcactctctgctaaagttgtagat
gatgaaatctactacttcagaaaaccaatcattcctcagaaggaaccctcacctttgtta
gaaaagaagatacaattgctagaagctaaatttgcagagttagaaggaggagatgatgat
attgaggagatgggagaagaggatagtgaagtcattgaagctccatctctacctcaactg
cagacacccctggccaatgagttggacctcatgccctatacacccccacagtctacccca
aagtctgccaaaggcagtgcaaagaaggaaagttctaaacgaaaaatcaacatgagtggc
tacattttgttcagcagtgaaatgagagctgtgattaaagcccagcacccagactactct
tttggggagctcagcagactggtggggacagaatggagaaaccttgaaacagccaagaaa
gcagaatatgaagagcgggcagctaaagttgctgagcagcaggagagagagcgagcagca
cagcaacagcagccgagtgcttctccccgagcaggcacccctgtgggggctctcatgggg
gtggtgccaccaccaacaccaatggggatgctcaatcagcagttgacacctgttgcaggc
atgatgggtggctatccgccaggccttccacctttgcagggcccagttgatggccttgtt
agcatgggcagcatgcagccacttcaccctggggggcctccacctcaccatcttccgcca
ggtgtgcctggcctcccaggcatcccaccaccgggtgtgatgaatcaaggagtagccccc
atggtagggactccagcaccaggtggaagtccgtatggacaacaggtaggagttttggga
cctccagggcagcaggcaccacctccatatcctggtcctcatccagctggcccccctgtc
atacagcagccaacaacgcccatgtttgtggctcccccaccaaagacccaaaggcttctc
cactcagaggcctacctgaaatacattgaaggactcagtgctgaatccaacagcattagc
aagtgggaccaaactttggcagctcgaagacgggatgtccatttgtccaaagaacaggag
agccgcctaccttctcactggctcaaaagtaaaggggcacacaccaccatggcagatgcc
ctctggcgcctacgggatttaatgcttcgagacactctcaacatccgacaggcatacaac
ctagaaaatgtttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
Protein sequence (7)   
   UniProt (1)   
   RefSeq(pep) (6)   
DNA sequence (67)   
   RefSeq(nuc) (7)   
   GenBank (30)   
   EMBL (30)   
Protein domain (4)   
   Pfam (4)   
All databases (111)   

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