KEGG   Mus musculus (house mouse): 67207
Entry
67207             CDS       T01002                                 
Symbol
Lsm1, 2810025O06Rik, CASM
Name
(RefSeq) LSM1 homolog, mRNA degradation associated
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    67207 (Lsm1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmu03019]
    67207 (Lsm1)
Messenger RNA biogenesis [BR:mmu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     67207 (Lsm1)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     67207 (Lsm1)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 67207
NCBI-ProteinID: NP_080308
MGI: 1914457
Ensembl: ENSMUSG00000037296
UniProt: Q8VC85 Q544C9
Position
8:26275326..26294003
AA seq 133 aa
MNYMPGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIP
RGIFVVRGENVVLLGEIDLEKESDTPLQQVSIEEILEEQRVQQQTRLEAEKLKVQTLKDR
GLSIPRADTLDEY
NT seq 402 nt   +upstreamnt  +downstreamnt
atgaactatatgcccggcaccgccagcctcatcgaggacatcgacaaaaagcacttggtc
ctacttcgagatggaagaacacttataggttttttaagaagcattgatcaatttgctaac
ttagtgctccatcagactgtggagcgaattcatgtgggcaaaaagtacggtgatattcct
cgagggattttcgtggtcagaggagagaatgtggtcctactaggagaaatagacctggag
aaggagagtgacacgccccttcagcaagtgtctattgaagagatcctagaggaacagagg
gtgcaacagcagaccagactggaggcagagaagctgaaggtccagacccttaaagatcgg
ggcctttccattcctcgcgcagacactctggacgagtactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (14)   
   RefSeq(nuc) (2)   
   GenBank (6)   
   EMBL (6)   
Protein domain (1)   
   Pfam (1)   
All databases (33)   

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