KEGG   Methylobacterium nodulans: Mnod_1599
Entry
Mnod_1599         CDS       T00839                                 
Name
(GenBank) DEAD/DEAH box helicase domain protein
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
mno  Methylobacterium nodulans
Pathway
mno03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mno00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Mnod_1599
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mno03400]
    Mnod_1599
Enzymes [BR:mno01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Mnod_1599
DNA repair and recombination proteins [BR:mno03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      Mnod_1599
SSDB
Motif
Pfam: TRCF Helicase_C DEAD UvrB_inter CarD_TRCF_RID AAA_30 UB2H RecG_dom3_C AAA_16
Other DBs
NCBI-ProteinID: ACL56589
UniProt: B8IPT9
Position
1678240..1681515
AA seq 1091 aa
MVKHRRRVAVGESAAEIIAPAIPSGALAVALIGLAETAAPLVFLARDGRRLDEIAAILRS
LAPARQVAVYPEWDCLPGDRTSPSRGTMGARAGVLRWLADTAHRPDLLLSTAPALIQRVP
PPEIWAEARVALRVGDGFEAASLTAALTRLGYILDERVDEPGEIAVRGRTLEVFPAAAPR
PCRIEHEDGRITAIRSYDPVTQRSVADAAELVIDPATELILGPDAPEPLAPFTGQEHRLP
RFYPRLATVLDALPGARLVVEAGAEARAAAFFEQVTEGSAAGEAHPADARLYLTPPEWSD
VLDRHRFASADAIGDVAVPAFVRERRPAAAFGRFLTERLRAGDRVLLTGPPGPLRRLARE
AVDQLGHKLLRARSWACVLAAEPGQVAVLEAPIGAGFRVPEAEVTVVAAADLLGLRAAPA
QGDAAAALPFGEIDLHRGDVAIHEDHGLCVFEGLEPVGGPDGEAEEAARLRFADDAVLLA
PLSQADRIWRYGSAAEAVSLDRLDGGTWEKRRATVAAAVAATARRMLDLAETRRRARAEP
LIPPDRQMERFCAGFGFSLTPDQAAAIDAVLEDLAAGRPMDRLVCGDVGFGKTEVALRAA
AAALFAGRQVALAAPTTVLVRQHTETFRRRFARFGIVPAQLSRLTPPAEAKRVKAGLAEG
SVRLVIGTHALAGRGVRMPDLGLVIIDEEQRFGTAQKERLRRAARGAHVLTLTATPIPRT
LQTALVGLQDLSVIATPPVVRQPIRTVIAPFAPDTVRAALMREHRRGGQSFVVCPRIADL
APMEAQLRSIVPELTIALAHGELPPDTMDEAMVRFAAGEGDVLLATNIIESGLDVPRANT
MLVWHPERFGLAQLHQLRGRVGRGQRRAAAYLLTDPQARLPAASEKRLRTLAALDRLGAG
FALSARDLDLRGAGDLFGEDQAGHVKLIGLDLYRDLLERAVRAARGEPDEAAPAEIRLGL
AGRIPQEYVPEPELRLSLCARLARLRTADEAEALRDEIEDRFGPLPPEVDTLLTLARLRA
ACRDLGIARLSAGPQGLAADFEPGRVEAVARAVDGVVRRGDRLILHRPCADPAECGRLAA
RFLRALEAAPA
NT seq 3276 nt   +upstreamnt  +downstreamnt
atggtgaagcacaggcgtcgcgtcgcggtcggtgagagcgccgcggagatcatcgcaccg
gccatcccctcgggggcgctcgcggtcgccctcatcgggctcgcggagacggccgcgccc
ctggtgttcctcgcccgcgacgggcggcggctcgacgagatcgccgcgatcctccgcagc
ctcgcgcccgcgcgccaagtggcggtctatccggaatgggactgcctgccgggcgaccgc
acctcgccgtcccgcggcaccatgggcgcgcgcgcaggcgtgctgcgctggctggcggac
acggcgcaccgtccggatctgctcctcagcacggcgccggccctgatccagcgggtgccg
ccgcccgagatctgggccgaggcccgcgtcgcgctgcgggtcggcgacggcttcgaggcc
gcttccctcaccgccgcgctcacccgcctcggctacatcctcgacgagcgcgtcgacgag
cccggcgagatcgcggtgcgcgggcgaaccctcgaggtcttcccggcggccgcgccgcgc
ccctgccgcatcgagcacgaggacgggcgcatcaccgcgatccgctcctacgatccggtg
acccagcgctcggtcgccgacgcggcggagctcgtcatcgatccggccaccgagctcatt
ctcggtccggatgcgcccgagccgctcgcgcccttcaccggccaggagcaccgcctgccc
cgcttctacccccgcctcgcgaccgtcctcgacgcgctgccgggggcgaggctggtggtc
gaggccggcgccgaggcgcgcgctgcggccttcttcgagcaggtcacggaggggagcgcg
gccggggaggcgcatccggcggatgcgcggctctacctcacgccgccggaatggtccgat
gtgctcgaccggcaccgtttcgcctcggccgatgcgatcggggacgtggcggtgccggcc
ttcgtccgggagcggcgcccggccgccgccttcggccggttcctcaccgagcgcctgagg
gcgggggaccgcgtcctgctgaccggcccgcccgggcccctgcgccggcttgcccgcgag
gccgtcgaccaactcgggcacaagctcctgcgggcgcgcagctgggcctgcgtgctggcg
gcggaacccggacaggtggcggtgctggaggcgccgatcggggccgggttccgggtgccg
gaggcagaggtcacggtggtggccgccgccgacctgctgggcttgcgggcggcgccggcg
cagggcgatgcggccgcggcgctgcccttcggcgagatcgacctgcaccggggcgacgtc
gccatccatgaggatcacggcctgtgcgtcttcgaggggctggagcccgtcggcggcccc
gacggcgaggccgaggaggcggcacgcctgcgcttcgccgacgatgccgtcctgctcgcg
cccctgagccaggccgaccggatctggcgctacgggtcggcggccgaggccgtctccctg
gaccggctcgatggcggcacctgggagaagcggcgggcgaccgtcgcggcggccgtcgcc
gcgacggcgcggcggatgctcgatctcgccgagacccgccgccgcgcccgggcggagccc
ctgatcccgcccgaccggcagatggagcgcttctgtgccggattcggcttttccctcacg
cccgatcaggcggccgcgatcgacgcggtgctggaggatctcgccgcgggccgtccgatg
gaccgcctcgtctgcggcgatgtcggcttcggcaagacggaggtggccctgcgggccgcg
gcggcggcgctgttcgcgggccggcaggttgccctcgcggcgccgaccacggtcctcgtt
cgccagcataccgagaccttccggcgccgcttcgcgcgcttcggcatcgtgccggcgcag
ctctcgcgcctgacgcctcccgcggaggccaagcgcgtgaaggcgggccttgccgagggc
agcgtgcggctcgtgatcggcacccacgcgctcgccggccgcggcgtgcggatgccggat
ctcgggctcgtgatcatcgacgaggagcagcgcttcggcaccgcccagaaggagcggctg
cgccgcgccgcccggggcgcgcatgtcctgaccctcaccgccaccccgatcccccgcacg
ctccagacggcgctggtgggcctgcaggacctgagcgtgatcgccacgcccccggtggtc
cgccagccgatccggaccgtcatcgcgcccttcgcacccgacacggtgcgggcggcgctg
atgcgcgagcaccgccgcggcggccagagcttcgtcgtctgcccgcgcatcgccgatctc
gcgccgatggaggcgcagctgcgcagcatcgtgccggagctgacgatcgcgctcgcgcat
ggcgagcttccccccgacacgatggacgaggcgatggtccgcttcgcggccggggagggc
gacgtgctgctcgccaccaacatcatcgagagcggcctcgacgtgccgcgcgccaacacg
atgctggtctggcatccggagcggttcggcctcgcgcagctgcatcagctgcgcgggcgc
gtgggccgcgggcagcggcgggcggcggcctacctgctcaccgatccgcaggcgcggctc
ccggcggcgagcgagaagcgcctgcgcaccctcgcggccctcgaccggctcggcgccggc
ttcgcgctgagcgcccgcgacctcgatctgcgcggcgcgggcgacctcttcggcgaggat
caggccgggcacgtcaagctgatcgggctcgacctctaccgcgatctcctggagcgggcg
gtgcgggccgcccgcggcgagcccgacgaggcggcgccggccgaaatcaggctcggcctc
gcggggcgcatcccgcaggaatacgtgcccgagccggaactgcgcctgagcctctgtgcg
cgtctcgcgcggctgcggactgccgacgaagccgaggccctgcgggacgagatcgaggat
cgcttcggcccgctgccgcccgaggtcgacactctgctgacgctggcccggctgcgcgcg
gcctgccgggacctcggcatcgcgcgcctcagcgccggaccgcagggccttgccgccgac
ttcgagcccggccgggtggaggccgtcgcgcgggcggtggatggcgtggtccggcgcggc
gaccgcctgattctgcaccgcccctgcgccgatccggccgaatgcgggcgcctggcggcc
cggttcctgcgggcgctggaggccgcgccggcgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

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