KEGG   Methylobacterium nodulans: Mnod_2928
Entry
Mnod_2928         CDS       T00839                                 
Name
(GenBank) DEAD/DEAH box helicase domain protein
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
mno  Methylobacterium nodulans
Pathway
mno03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mno00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Mnod_2928
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mno03019]
    Mnod_2928
   03009 Ribosome biogenesis [BR:mno03009]
    Mnod_2928
Messenger RNA biogenesis [BR:mno03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Mnod_2928
Ribosome biogenesis [BR:mno03009]
 Prokaryotic type
  rRNA helicases
   Mnod_2928
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII
Other DBs
NCBI-ProteinID: ACL57879
UniProt: B8IH04
Position
3023310..3024947
AA seq 545 aa
MAFPPVPAPLARALDARGYADPTPVQAAVLEPAVAGRDLLVSAQTGSGKTVAYGLAMADT
LLDGGETLPPPGAPLALVIAPTRELALQVHRELSWLYGAAGARVAACVGGMDPRRESRLL
GEGVHIVVGTPGRLRDHLERRNLDPSRMRATVLDEADEMLDLGFREDLEFILGATPAERR
TLLFSATLPKGIVALAEHYQREALRIAVAGETRGHADIEYRALRILPRETELVVVNTLRL
VEARTAIVFCNTRNAVRHLQAVLTERGFTAVALSGELGQGERNAALQALRDGRARVCVAT
DVAARGIDLPGLGLVIHAELPHDAEVLQHRSGRTGRAGQKGISVLLVPPSRRRKAEELMA
RAGVVPVWSGPPPADEIRALDQERLLADPLLTDETSEEDRAMAQALLARCSAEDLAAALV
RAYRARLPAPEEVTDPGFPTGRPAPARRDKPRAPLGPSVWFRLNVGRRDNADPRRLLPML
CRRGGVTRDEVGAIRIFERETKFEIRGGAAERFADSFGRTGSADLQIEMLDAVPDLPRRP
SRRRG
NT seq 1638 nt   +upstreamnt  +downstreamnt
gtggcttttcctcccgttcccgccccgctcgcccgtgccctcgacgcgcggggctatgcc
gatccgacgccggtccaggccgccgtgctcgaacccgccgtcgcagggcgcgacctcctg
gtctcggcccagaccggctccggcaagaccgtggcatatggcctcgccatggcggatacg
ctgctcgatggcggcgagacgctgcccccgcccggggctccgctcgccctcgtgatcgcg
ccgacgcgcgagctagcgcttcaggtccatcgcgagctgtcctggctctacggagcggcc
ggggcgcgggtggcggcctgcgtcggcggcatggatccgcgccgggagagccgcctgctc
ggtgagggcgtgcacatcgtcgtcgggacgccgggccgcctgcgcgaccacctggagcgg
cgcaatctcgatccgtcgcggatgagggcgaccgttctcgacgaggccgacgagatgctg
gatctcggcttccgcgaggacctggaattcatcctgggcgcgacgccggccgagcggcgc
accctgctgttctccgcgacgctgccgaagggcatcgtggcgctcgccgagcattaccag
cgcgaggcgctgcgcatcgcggtcgcgggcgagacccgcgggcatgccgatatcgagtac
cgggcgctgcgcatcctgccacgcgagaccgagctcgtggtggtcaacaccctgcggctg
gtcgaggcgcgcaccgccatcgtgttctgcaacacccggaacgcagtgcgccacctgcag
gcggtgctcaccgagcgcggcttcacggcggtggcgctctcgggagagctcggccagggc
gagcgcaacgcggcgctgcaggcgctgcgggacggccgtgcccgggtctgcgtggccacc
gacgtggcggcgcgcggcatcgacctcccggggctcggcctcgtcatccatgccgagctg
ccgcacgatgccgaggtgctccagcaccgctcgggccgcaccggccgcgcgggccagaag
ggcatcagcgtcctcctggtcccgccctcccggcgtcgcaaggccgaggagctgatggcc
cgggcgggcgtggtgccggtgtggtccggtccgccgccggccgacgagatccgcgctctc
gaccaggagcggctgctcgccgatccgctcctcacggacgaaacgagcgaggaggatcgg
gcgatggcgcaggcgctcctcgcgcgctgctcggccgaggatctcgcggccgctctggtg
cgcgcctatcgggcccgcctgcccgcgcccgaggaggtgaccgatccgggttttccgacc
ggccgtcccgccccggcgcgccgcgataagccgcgtgcgccgctcggcccgagcgtctgg
ttccgtctcaatgtcggccggcgcgacaatgccgacccgcggcgcctgctgccgatgctg
tgccggcgtggcggcgtcacgcgcgacgaggtgggggcgatccgcatcttcgagcgggag
acgaagttcgagatccgcggtggcgccgcggagcgtttcgcggacagcttcggacgcacc
ggctccgccgacctgcagatcgagatgctcgacgccgtccccgaccttccccgccgcccc
agccggcgccggggctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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