KEGG   Methylobacterium oryzae: MOC_4284
Entry
MOC_4284          CDS       T03299                                 
Name
(GenBank) Exodeoxyribonuclease V alpha chain
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
mor  Methylobacterium oryzae
Pathway
mor03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:mor00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    MOC_4284
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mor03400]
    MOC_4284
Enzymes [BR:mor01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     MOC_4284
DNA repair and recombination proteins [BR:mor03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     MOC_4284
SSDB
Motif
Pfam: AAA_30 AAA_19 UvrD_C_2 HHH_4 Viral_helicase1 SH3_13 AAA_11 AAA_16 AAA Herpes_Helicase AAA_22 HerA_C AAA_28 UvrD-helicase RsgA_GTPase ATP_bind_1 ATPase_2 DUF4314 AAA_29
Other DBs
NCBI-ProteinID: AIQ92039
UniProt: A0A089QBU5
Position
4299114..4301009
AA seq 631 aa
MDPERDRTALVRHLAEDPAFVGIGYATAGKLQAALGDDLGRALTDGDLVALEPILGIERA
HDLVVAWRDRQAEGDVVVWLGENGFDGRLARKIVALWGLEAPLRLRENPWLMMAVADFEK
VDAVAHRLGLPLDADDRSIAAVEAALYRRLDEHHTLTRHAEVVRLVARLLRCSASRASEA
VSKAVALGVAVRMGEGLQPAGAAMMEAYVAGAIARMIEGQVSEDLIAREVPAPELDVWLD
EAAGAIGVDLGCEQRDAVHLALRSRFGLVVGGAGVGKTTVLKAIVAASERFGRAIHMMAL
AGRAAVRMTEATGRKASTIAAFLKAVEAKQIAVGPEALVVIDESSMLDLPTLYRILRVMP
PSGRLLLVGDEAQLAPIGFGLTLHALVGIPEIPKVELRTIRRQTAASGIPAVAAAIRDGR
LPWLQPFSPDVGGVTLLECEPHAIADHVKDALAELGGVEGATILSALKTGASGTVALNAE
LHHLVALGCPPGERGRFIAGEPVLFLRNDYRRDLRNGSLGTVTEIDDDGVAVNFDGNEQR
LAGRDLDDLDHAYAVTVHKAQGTAFENVVIPIVSSRLLDRSLIYTAVTRAIARVVLVGSR
EMLRLAVEKQPISADREVGLGLALATRNQSE
NT seq 1896 nt   +upstreamnt  +downstreamnt
gtggatccggagcgcgatcgtacggctctcgtccgccacctcgcggaggatccagctttc
gtagggattggctacgcgaccgccggcaagctccaggctgctctcggcgacgatctcggc
cgcgcactgaccgacggcgacctcgtcgcccttgagccgatcctcgggatcgagcgggcc
cacgacctcgtagtggcgtggcgcgatcggcaagccgaaggcgacgtcgtcgtctggctc
ggggagaacggattcgacggacgcctcgcccgcaagatcgtcgccctttggggcctcgag
gctccgctccgcctccgggagaacccgtggcttatgatggccgtggccgacttcgagaaa
gtcgacgccgtggcgcatcggctcggtctgccgctcgacgccgacgatcggagcatcgcg
gccgtggaggctgccctctaccggcggctcgacgagcatcacaccttgacccgccacgcc
gaggtcgtgcgcctagtcgctcgactcctgcgatgttcggcgtcgcgcgcctccgaggcc
gtatccaaggcggtagccctcggcgtcgccgttcggatgggcgaaggcctgcagccggcc
ggcgcggccatgatggaggcctacgtcgccggcgcgatcgcccggatgatcgaggggcag
gtgagcgaggatttgatcgcccgcgaggtccccgctccggaactcgacgtttggctggac
gaggcggcaggcgccatcggcgtcgatctgggctgcgagcaacgggatgccgtccacctc
gccctgagaagccgtttcggtctcgtcgtcggtggcgccggcgtcggcaagacgaccgtg
ctcaaggcgatcgtagccgcctccgagcggttcgggcgagcaatccacatgatggcgctc
gccggccgtgccgccgtccggatgacggaggcgacgggtaggaaggcctcgacgatcgca
gcctttctgaaggccgtcgaggccaagcagatcgccgtcgggcccgaagccttggtcgtg
atcgacgaaagctcgatgctcgaccttccgacgctctaccggatcctgcgggtcatgccg
ccaagcggccgtctcctgctggtcggcgacgaggcacagttggcgccgatcgggttcggc
ctgacgctgcatgcgctcgtcggcatcccggagatcccgaaggtcgaactacggaccatt
cggcggcagaccgccgcctccggcatccctgccgtcgcggctgccatacgcgacggacgg
ctcccttggcttcagcctttctcccctgacgtcggcggcgtcacgctgctcgaatgcgag
ccccacgcaattgcggaccacgtgaaggacgccctcgccgagctcggcggggtcgaaggg
gccacgatactctcggctctcaaaaccggtgcgagcggaacggtcgctcttaatgctgag
ctccaccatctggtggccctcggatgcccacctggggagcgcggccggttcattgccgga
gagccagtgctgttcttgaggaacgactaccgtcgggacctacgcaacggcagcctgggc
accgttacggaaatcgacgatgatggggtggccgtgaacttcgatggcaatgagcagcgg
ttggccggacgcgacctcgacgatctcgaccacgcctatgcggtcacggtccacaaggcg
cagggcacggccttcgagaacgtcgtgatcccgattgtatcgtctcgcctgctggaccgc
tcgttgatctacaccgccgtcacccgcgcgatcgcgcgggtcgtcctggtcgggagccgt
gaaatgctacgcttagctgtggaaaagcagccgatttctgccgatcgggaagttggcctc
ggtctcgcccttgccacgcggaaccagtcagagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (19)   
   Pfam (19)   
All databases (29)   

Download RDF
DBGET integrated database retrieval system