KEGG   Methylobacterium oryzae: MOC_5335
Entry
MOC_5335          CDS       T03299                                 
Name
(GenBank) Ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
mor  Methylobacterium oryzae
Pathway
mor03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mor00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MOC_5335
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mor03019]
    MOC_5335
   03009 Ribosome biogenesis [BR:mor03009]
    MOC_5335
Enzymes [BR:mor01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     MOC_5335
Messenger RNA biogenesis [BR:mor03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     MOC_5335
Ribosome biogenesis [BR:mor03009]
 Prokaryotic type
  rRNA processing factors
   MOC_5335
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1
Other DBs
NCBI-ProteinID: AIQ93090
UniProt: A0A089P2U1
Position
complement(5346660..5349719)
AA seq 1019 aa
MANKMLIDAMHPEETRVVTVHGSRVEEFDFEAANRRQLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFNEIHPDYYQIPLADRQALLEEDARDAEEHREREERRRRSPRRSRGRRAE
ARARGADETVSAEDGHEASQTEDQAEIRTEAGFDPAAEPDTLAEHPEAVREALASETAAG
DIPVALDEPARDEPAQAAEPAAEAPFDAAPAEAAPAKAQAAHDMAGPVADDAAAEQDAPV
EAEARIAVAGALTVAEAPAESLAEETAEPADADEADDASDEDDEESDDEDEDEDESEDDE
DESDEDEDESDEDSDDPDAEPKIAQVGGNGDALAEIPERPRHYRRQYKIQEVIKRRQIIL
VQVVKEERGTKGAALTTYLSLAGRYSVLMPNTGRGGGISRKITSAADRKRLKEVVQDLEV
PEGMGVILRTAGASRSKPEIARDFEYLMRLWESVRELTLTSMAPALVYEEGSLIKRAIRD
LYNKDLDEVLVAGEDAYREAKDFMRMLMPGQSKVVKPYRDPTPIFARFGVEQQLDAMFSS
HVSLKSGGYLVINPTEALVSIDVNSGRATREHDIEDTALKTNLEAAEEVARQLRLRDLAG
LIVIDFIDMEEKRNNRAVEKKLNECLKNDRARIQVGRISPFGLMEMSRQRIRTGVLESSS
IPCAHCGGSGFVRATASVALHILRSIEEALLKSASHNLVLRTRTEVALYILNQKRGHLRE
LEMRFGVTITIAADERLAATAAFQLDRGEPAQRAEGPVTGVRAQAISPTTEFEDEDEEAD
EVEAEVEADAEGEAEEGRAETREEGEGRRRRRRRRRRGGRQDGRAEEDRGDDDRQEGERS
DEDGRDEDWDGEEPAAAEAPAEAVAAEAGETDEAVAGPDEAARAEDEGGRRRRRGRRGGR
GRSEGRTRDAAETEDAPDAVGETVALSAEEPVSAQAVAEAVEAAPAAGRTETAVDLPVAE
AEAPVPADREPAAAPDAATAAPAEVPAEPVAVVLTPPADPDRPKRAGWWSRTKAALTGE
NT seq 3060 nt   +upstreamnt  +downstreamnt
atggccaacaaaatgctgatcgacgcgatgcacccggaggagacccgggtcgtcacggtc
cacgggtctagggtcgaggagttcgatttcgaagccgccaaccggcgtcagctgcgcggc
aacatctatctcgccaaggtgacccgggtggagccgtcgctccaggcggcgttcgtggag
tatggcggcaaccgccacggcttcctggccttcaacgagatccaccccgactactaccag
atcccgctcgccgaccggcaggcgctcctcgaggaggacgcccgcgacgccgaggagcac
cgcgagcgtgaggagcgccgccgccggtcgccgcgccgctcccgcggccgccgcgccgag
gcccgcgcccgcggcgccgacgagaccgtgagcgccgaggacgggcacgaggcgtcccag
accgaggatcaggcagagatccggacggaagccggtttcgatccggccgccgagcccgat
acgctcgccgagcatcccgaggccgtgcgggaggccctcgcttccgagaccgcggccggc
gacatccccgtggcgctggacgagccggcacgggacgagccggcgcaggccgccgagccg
gcggccgaggcgccgttcgacgctgcccccgccgaggccgcccctgccaaggcgcaggcg
gcgcacgacatggccgggccggtcgctgacgacgccgccgccgagcaggacgccccggtc
gaggccgaggcccgcatcgccgtggcgggggcgctgaccgtcgccgaagcgccggccgag
tccctcgcggaggagaccgccgagccggcggacgccgacgaggcggatgacgcgtccgac
gaggacgacgaggaatccgacgacgaggatgaggacgaggacgagtcggaggacgacgag
gacgagtccgacgaggatgaggacgagtcggacgaggattccgacgatcccgacgccgag
cccaagatcgcccaggtcggcggcaacggcgacgccctggccgagatccccgagcggccc
cgccactaccgccgccagtacaagatccaggaggtgatcaagcgccgccagatcatcctg
gttcaggtggtcaaggaggagcgcggcacgaagggcgcggcgctcaccacctacctgtcg
ctcgccggccgctactcggtgctgatgcccaataccggtcgcggcggcggcatctcccgg
aagatcacctcggcggccgaccgcaagcgcctcaaggaggtcgtgcaggatctggaggtg
cccgaagggatgggcgtcatcctgcgcaccgccggcgcctcgcgctccaagcccgagatc
gcccgcgacttcgagtacctgatgcggctgtgggagtcggtccgcgagctgacgctgacc
tcgatggcgcccgcgctggtctacgaggaaggctcgctgatcaagcgcgccatccgcgac
ctgtacaacaaggatctggacgaggttctggtcgccggcgaggacgcctaccgcgaggcc
aaggacttcatgcggatgctgatgcccggccagtccaaggtcgtgaagccctaccgcgac
ccgacgccgatcttcgcccgcttcggcgtcgagcagcagctcgacgcgatgttctccagc
cacgtctcgctgaagtccggcggctatctggtgatcaacccgaccgaggccctggtctcg
atcgacgtgaactcgggccgcgccacccgcgagcacgacatcgaggacaccgccctcaag
acgaacctggaggccgccgaggaggttgcccgccagctgcgcctgcgcgacctcgcgggc
ctgatcgtcatcgacttcatcgacatggaggagaagcgcaacaaccgcgccgtcgagaag
aagctgaacgagtgcctgaagaacgaccgcgcccgcatccaggtcggccggatctcgccc
ttcggcctcatggagatgagccgccagcgcatccgcacgggcgtgctcgaatcctcctcg
atcccctgcgcccattgcggcggctcgggcttcgtgcgcgccaccgcctcggtggccctg
cacatcctgcgctccatcgaggaggcgctgctcaagtcggcgagccacaacctcgtgctg
cggacccgcaccgaggtcgccctctacatcctcaaccagaagcgcgggcacctgcgcgag
ctggagatgcgcttcggcgtgaccatcacgatcgcggccgacgagcggctggccgccacc
gcggccttccagctcgaccgcggcgagccggctcagcgcgccgagggtccggtgacgggt
gtgcgcgcccaggcgatctcgcccaccacggagttcgaggacgaggacgaggaggccgac
gaggtcgaggccgaggtcgaggcggatgccgagggcgaggccgaggagggccgcgccgag
acgcgcgaggagggtgaaggccgccgccgccgccgccgccgccgccgccggggcgggcgt
caggacggtcgcgccgaggaggatcgcggcgacgatgatcgccaggagggcgagcgttcg
gacgaggacggtcgggacgaggactgggacggcgaggagccggccgcagccgaggcgccg
gccgaagccgtcgcagccgaggccggggagaccgacgaggccgtggccggccccgacgag
gcggcccgcgccgaggacgagggcggacgccgccgccgccgcggacgccgcggcggtcgc
ggacggagcgagggccgcacgcgggacgccgccgagacggaggatgctcccgacgcggtg
ggcgagacggtggccctgtcggcggaagagccggtgagcgcccaggcggtggcggaggcg
gtcgaggccgccccggcggccggccgcaccgagaccgccgtggatctgccggtggcggaa
gccgaagcccctgtgccggccgaccgggagcccgccgctgcgccggacgccgcgaccgct
gccccggcggaggtccccgcggagcccgtggcggtggttctgacgccgcccgccgatccg
gaccgtcccaagcgcgcgggctggtggtcgcgcaccaaggccgctctgacgggcgaatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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