KEGG   Methylobacterium oryzae: MOC_5640
Entry
MOC_5640          CDS       T03299                                 
Name
(GenBank) UvrD/REP helicase
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
mor  Methylobacterium oryzae
Pathway
mor03420  Nucleotide excision repair
mor03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mor00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    MOC_5640
   03430 Mismatch repair
    MOC_5640
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mor03400]
    MOC_5640
Enzymes [BR:mor01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     MOC_5640
DNA repair and recombination proteins [BR:mor03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     MOC_5640
   MMR (mismatch excision repair)
    Other MMR factors
     MOC_5640
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 AAA_30 UvrD_C_2 PcrA_UvrD_tudor DUF3553 AAA_11 DUF5133
Other DBs
NCBI-ProteinID: AIQ93395
UniProt: A0A089P3Q6
Position
complement(5648255..5650765)
AA seq 836 aa
MPIRGHRGDGGAPQPAAGPEGRGSSRRGANGLDAVRDLVQGCGMQNRPQAQPAGDGAPAT
SITARAMGALRRDAAGYLEGLNPEQRRAVETTEGPILVLAGAGTGKTRVLTTRIAHLIAT
GRARPFDILAVTFTNKAAREMKHRIGTLIGPAGEGMPWLGTFHAIGTKILRRHAELVGLK
SDFTILGTDDQLRLMKQVIADQNVDEKRWPARALSHAIDGWKNRGLGPEQVPPGEAASFA
FGKGGALYTAYQARLATLNAVDFGDLLLLCLKLWRENPDVLANYQDRFRYILVDEYQDTN
VAQYLWLRLLAQQRKNIACVGDDDQSIYGWRGAEVDNILRFEHDFPGAVVVRLERNYRST
GHILAAASGLIAKNESRLGKTLRTDDEPGERVTVTGAWDSEEEARMLAESIESLQVKQHP
LSEIAVLVRISAQMREIEDRFVQLGLPYRVIGGPRFYERAEIRDALAYLRATVNVSDDLA
FERIVNTPKRGLGDATLQQLHTYGRANRLPLRIAAERLCETDELKPRVRSTLRALTESFA
RWARLVEAQPHSEVAQTILEESGYTEMWQKDRSADAAGRLENLKEFVRSMEEFPDLAAFL
EHVSLVMEASEAEGAERVSLMTLHAAKGLEFDTVFLPGWEDGLFPNQRALDESGRAGLEE
ERRLAHVGLTRARKRAKLSFAVNRRIHGLWSSTIPSRFIDELPETAVDVVEAPAHFSAGA
SRFDRNPAPFGSSYGTPGWQRAQANTAPGGRSGSGGGFRSAGPGGRSGGQSGGPRQIEGE
LIAKSTGAPSAFQAGQRVFHTKFGPGTVAGVDGNKLTVDFDKAGQKMVLDSFIQAG
NT seq 2511 nt   +upstreamnt  +downstreamnt
gtgccgatccgcggccaccggggagacggcggcgccccgcagccggccgcgggccccgaa
gggcgcggatcgtcccggcgcggcgcgaacggcctcgacgccgttcgcgatttggtccag
ggatgcgggatgcagaaccgcccgcaagcgcagcccgccggggacggcgcgcccgccacg
tccatcaccgcccgcgccatgggcgccctccgccgcgacgccgccggctatctcgagggg
cttaatcccgagcagcgccgcgccgtcgagaccacggagggcccgatcctcgtgctggcc
ggcgccggcaccggcaagacccgggtgctgaccacccgcatcgcccacctgatcgccacc
gggcgggcgcgccccttcgacatcctggcggtgaccttcaccaacaaggccgcccgggag
atgaagcaccggatcggcacgctgatcggccccgccggcgagggcatgccctggctcggc
accttccacgccatcggcaccaagatcctgcgccgccacgccgagctggttgggctcaaa
tccgacttcaccatcctgggcaccgacgaccagctccggctgatgaagcaggtgatcgcc
gaccagaacgtcgacgagaagcgctggccggcccgggccctgtcccacgccatcgacggc
tggaagaaccgcggcctcggccccgagcaggtgcccccgggcgaggctgcctcgttcgcc
ttcggaaagggcggcgcgctctacaccgcctaccaggcccggctcgcgacgctaaacgcc
gtcgatttcggcgatctcctgctgctctgccttaagctctggcgggagaaccccgacgtc
ctggccaattaccaggaccggttccgctacatcctggtggacgagtaccaagacaccaac
gtcgcgcagtacctgtggctgcgcctgctggcgcaacagcgcaagaacatcgcctgcgtg
ggcgacgacgaccagtcgatctacggctggcgcggcgccgaggtcgacaacatcctgcgc
ttcgagcacgatttccccggcgcggtggtggtgcggctggagcgcaactaccgctccacc
ggccatatcctcgccgccgcctcggggctgatcgccaagaacgagagccgcctcggcaag
accctgcgcaccgacgacgagccgggcgagcgcgtcaccgtcacgggcgcctgggattcc
gaggaggaggcgcggatgctcgccgaatcgatcgaatccctccaggtgaagcagcatccc
ctgtcggagatcgccgtgctggtgcggatttccgcgcagatgcgcgagatcgaggatcgg
ttcgtccagctcggcctgccctatcgggtcatcggcggcccgcgcttctacgagcgcgcc
gagatccgcgacgccctggcgtatctgcgcgccaccgtgaatgtcagcgacgacctcgcc
ttcgagcggatcgtgaacacgcccaagcgcggcctgggcgacgccaccctgcagcagctc
cacacctacggccgtgccaaccggctgcccctgcggatcgccgccgagcgcctgtgcgag
accgacgagctgaagccccgcgtccgctcgaccctgcgggcgctcaccgagagcttcgca
cggtgggcgcgactggtggaggcgcagccgcacagcgaggtcgcgcagacgatcctcgag
gaatccggctacaccgagatgtggcagaaggaccgctcggccgacgccgccggccggctg
gagaacctgaaggaattcgtccgctccatggaggaattcccggacctcgcggccttcctg
gagcacgtctccctggtgatggaggcctccgaggccgagggcgccgagcgggtctcgctg
atgacgctccacgccgccaaggggctcgaattcgacaccgtgttcctgcccggctgggag
gacggcctgttcccgaaccagcgggcgctggacgagagcggccgcgccggcctggaggag
gagcggcgcctcgcccatgtgggcctgacccgggcgcgcaagcgggcgaagctgtccttc
gcggtcaaccggcgcatccacgggctctggtcgtcgaccatcccgtcgcggttcatcgac
gagttgcccgagaccgccgtcgacgtggtcgaggcccccgcccacttctcggccggcgcc
tcgcggttcgaccgcaacccggcgccgttcggatcgagctacggcacgccgggctggcag
cgggcgcaggccaacaccgcgccgggtggccggtccgggtccggcggcggcttccggtcg
gcgggcccgggcggccgctccggcggccagtccggcggaccccgccagatcgagggcgag
ctgatcgccaagtcgacgggcgcgccctcggccttccaggccggccagcgggtcttccac
accaagttcggccccggaacggtcgcgggcgtcgatggcaacaagctcaccgttgacttc
gacaaggccggccagaaaatggtgctcgacagcttcatccaggccgggtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (20)   

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