KEGG   Marinomonas posidonica: Mar181_1727
Entry
Mar181_1727       CDS       T01508                                 
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
mpc  Marinomonas posidonica
Pathway
mpc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mpc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Mar181_1727
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mpc03019]
    Mar181_1727
   03400 DNA repair and recombination proteins [BR:mpc03400]
    Mar181_1727
Enzymes [BR:mpc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Mar181_1727
Messenger RNA biogenesis [BR:mpc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Mar181_1727
DNA repair and recombination proteins [BR:mpc03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Mar181_1727
SSDB
Motif
Pfam: RQC Helicase_C DEAD RecQ_Zn_bind HRDC ResIII
Other DBs
NCBI-ProteinID: AEF54765
UniProt: F6D0G7
Position
complement(1873072..1874820)
AA seq 582 aa
MTLKKRQALKRLGYSDYRPLQEEAIDALSAGQDVVLAAPTGGGKSLIYQSVGLIRHGVAV
IISPLISLMTQQVDQLNAKDIHAKFLNSTLNPGEQDDLVWSIRHDRIEFLYLSPEKLIQP
SVMGFLQSVDIALFAIDEAHCIAQWGGDFRPEYSQLGKVKQSFPTIPIIALTGSADKQTL
AGIQTSLGIPNADLIKGSIDRPNIQIQIAQKKQAKQQILYFLHHEVSGQSGIIYCRSRNK
TEELCAWLSHLGFNSLTYHAAMKDEDKQRNHATFSRETGTIMVATTAYGMGIDLPQIRFV
IHMDIPNTPEAYYQEIGRAGRDNEPAKALLLYGLQDMLKAQQLVSDTPEQARVELAKLTR
LFQILENRQCRKLSLLAHFDEISTPCGICDRCISKQAEHNATIASQKLLSLIYYTKGTQA
FSTLIQILLGKRTKTTSSIQAEKLPLFGKGKELTEAQWKTVIRHLLAFEYIQLVGNHSFL
IQLNEKARQVLKGQSQVILANDHYYPRMTEEELMKDHANWHKVKTWLYNQQEINMTDGQL
RKICQHKPTTAASLSRLSGISIDEVSRFSDSLLSLLHEKSIN
NT seq 1749 nt   +upstreamnt  +downstreamnt
atgactttgaaaaaacgacaggctcttaagcgcttaggttactcagattatagacctctc
caagaagaagcgatcgacgctttatcagcagggcaggatgttgtccttgcggcaccaacc
ggtggtggaaaatcgctcatataccaatcagtcggtttaattcgtcatggtgtcgctgtg
attatcagtccactgatctctctaatgactcagcaagtagatcaattgaatgcaaaagac
attcatgccaaatttctcaactccactttaaatccaggtgagcaagatgatttagtttgg
tccattcgccatgatcgcatcgaatttttatatttgtcgcctgaaaagctgatccaacca
tcagtaatgggctttttgcaaagtgttgatattgctctgttcgccattgacgaagcccat
tgcattgcgcaatggggaggggatttccgccccgaatacagccaacttgggaaagttaag
caatcttttccgactattccaatcattgcgctaacaggaagtgctgacaaacagactcta
gcaggcattcaaacctcattaggcattccaaacgcggacttgattaagggcagcattgat
cgacccaacatccaaattcaaattgcccagaaaaaacaagccaagcaacagatattgtat
tttcttcatcatgaagtctctggtcaatccggtattatttattgccgatcacgtaataaa
acagaagaattgtgcgcttggctaagccatctaggcttcaatagcttaacctatcatgct
gcgatgaaagatgaagacaaacaacgaaaccatgccacattctctcgagaaacaggcacc
attatggtcgccacaaccgcatacggcatgggaattgatttacctcaaatacgtttcgtg
attcatatggatattcctaacactcctgaagcctattaccaggaaataggtcgtgcaggt
cgtgataatgagccagcgaaagcactgctcttgtatgggttgcaagatatgttaaaagcc
caacaactggtgagcgatacgcctgagcaagcgcgagtggaattagcaaaactcacgcgc
ttatttcagatattggaaaatcggcaatgtcgtaaactcagtttattggcgcattttgat
gagatatcgacaccatgtggcatttgtgatcgctgtattagtaagcaggcagaacataat
gccactattgccagccagaaactcttgtccttaatctattacaccaaaggcactcaagct
ttctctactctcattcaaattttgctcggcaaaagaaccaaaacaacctccagcattcaa
gctgagaaattgccattatttggaaagggtaaggagctaacagaagctcaatggaaaacc
gttattagacaccttttggcgtttgaatacattcagctagtaggaaaccactctttcctt
atccagttgaatgaaaaagcccgccaagtactaaagggacaaagtcaagtcattctagca
aacgaccattattacccaaggatgacggaagaagaattgatgaaagatcatgctaattgg
cacaaagtaaaaacttggctgtacaaccaacaagaaattaatatgacagatggacaatta
cgaaaaatctgtcagcataaaccgacaacagctgcctcacttagtcgtttgtcgggtatt
tcaattgacgaagtcagtcggttctcagattctcttttaagccttttgcatgaaaaaagc
attaactaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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