KEGG   Micromonas pusilla: MICPUCDRAFT_18318
Entry
MICPUCDRAFT_18318 CDS       T02696                                 
Symbol
JGI:MicpuC2_18318
Name
(RefSeq) uncharacterized protein
  KO
K10756  replication factor C subunit 3/5
Organism
mpp  Micromonas pusilla
Pathway
mpp03030  DNA replication
mpp03410  Base excision repair
mpp03420  Nucleotide excision repair
mpp03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mpp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MICPUCDRAFT_18318 (JGI:MicpuC2_18318)
   03410 Base excision repair
    MICPUCDRAFT_18318 (JGI:MicpuC2_18318)
   03420 Nucleotide excision repair
    MICPUCDRAFT_18318 (JGI:MicpuC2_18318)
   03430 Mismatch repair
    MICPUCDRAFT_18318 (JGI:MicpuC2_18318)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mpp03032]
    MICPUCDRAFT_18318 (JGI:MicpuC2_18318)
   03036 Chromosome and associated proteins [BR:mpp03036]
    MICPUCDRAFT_18318 (JGI:MicpuC2_18318)
   03400 DNA repair and recombination proteins [BR:mpp03400]
    MICPUCDRAFT_18318 (JGI:MicpuC2_18318)
DNA replication proteins [BR:mpp03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    MICPUCDRAFT_18318 (JGI:MicpuC2_18318)
  DNA Replication Termination Factors
   ELG1-RFC complex
    MICPUCDRAFT_18318 (JGI:MicpuC2_18318)
Chromosome and associated proteins [BR:mpp03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    MICPUCDRAFT_18318 (JGI:MicpuC2_18318)
DNA repair and recombination proteins [BR:mpp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     MICPUCDRAFT_18318 (JGI:MicpuC2_18318)
  Check point factors
   HRAD17(Rad24)-RFC complex
    MICPUCDRAFT_18318 (JGI:MicpuC2_18318)
SSDB
Motif
Pfam: AAA Rep_fac_C DNA_pol3_delta2 Rad17 AAA_24 AAA_14 AAA_16 AAA_22 RuvB_N AAA_11 ResIII bpMoxR TniB AAA_19 AAA_5 AAA_3 DUF815 AAA_30 AAA_7 DEAD TIP49 Viral_helicase1 AAA_18 AAA_assoc_2 Mg_chelatase ATPase_2 AAA_28 AAA_2 DUF4359
Other DBs
NCBI-GeneID: 9685238
NCBI-ProteinID: XP_003060093
JGI: 18318
UniProt: C1MVS5
Position
Unknown
AA seq 332 aa
MWVEKYRPSRLADVAAHKDIIDTIGRLTKEDKLPHLLLYGPPGTGKTSTILAVAKELYGP
AFAQMTLELNASDDRGIDVVRNEIQSFASTMRFNATGFKLIILDECDSMTKDAQFALRRV
IEKYTKHTRFCLIGNYVSKIIPALQSRCTRFRFAPLGPESVRERVKHVVASEGVEITEEG
LAAVQTLGAGDMRRTLNILQARSYSHWSPYDPVGEDPAAPLDADAVYATTGQPRPADVEA
IAGVLLNEPFAEAVARVEEIKTSRGLALGDVARLLCEYVFRLHMPPTARAALVSEMADVE
HRLAYVTHERMQLLALVGAFSNAKEAIVNAAQ
NT seq 999 nt   +upstreamnt  +downstreamnt
atgtgggtggagaagtatcgcccgagccggctcgcggacgtcgccgcgcacaaagacatc
atcgacacgatcgggcgactcacgaaggaggacaagctgccgcatcttcttctgtacggg
cctccggggacggggaagacgtccacgatcttggccgtcgcgaaggagctgtacggaccc
gcgttcgcgcagatgacgctggagttgaacgcgtccgacgaccgcggcatcgacgtcgtg
cggaacgagatccaatccttcgcgtccacgatgcgcttcaacgcgaccgggttcaagctc
atcatcctcgacgagtgcgacagcatgacgaaagacgcgcagttcgcgctgcgtcgcgtc
attgaaaaatacacgaaacacacgcgcttctgcctcatcggaaactacgtctctaagatc
atcccggcgttgcagtcgcgatgcacgcggttcaggttcgcgccgctcggcccggagagc
gtccgcgagcgcgtcaagcacgtcgtcgcgagcgagggcgtggagatcacggaagagggg
ctcgccgcggtgcagacgctcggcgccggggacatgcgtcgcacgctgaacattcttcag
gcgcgttcgtattcacactggtccccatacgaccccgttggcgaggaccccgccgcgccg
ctcgacgccgacgccgtctacgcgacgaccgggcaaccgcgccccgcggacgtcgaggcc
atcgcgggggtgttactcaacgagccgttcgcggaggcggtggcgcgggtggaggagatc
aagacgtcgcgcgggctcgcgctcggcgacgtcgcgaggctgctgtgcgagtacgtcttc
cggctgcacatgccgccgacggcgcgcgcggcgctcgtgtcggagatggcggacgtcgag
caccggctggcgtacgtgacgcacgagcggatgcagttgttggcgctcgtgggggcgttc
tcgaacgcgaaggaggcgatcgtgaacgcggcgcagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (29)   
   Pfam (29)   
All databases (47)   

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