KEGG T02423: Mycsm

Mycobacterium smegmatis JS623: Mycsm_00883

Entry

Mycsm_00883 CDS T02423

Definition

DNA helicase/exodeoxyribonuclease V, alpha subunit (EC:3.1.11.5)

Orthology

K03581

exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]

Organism

msa Mycobacterium smegmatis JS623

Pathway

msa03440

Homologous recombination

Class

Genetic Information Processing; Replication and repair; Homologous recombination [PATH:msa03440]

SSDB

Motif

Pfam:

AAA_30 UvrD_C_2 AAA_19 Viral_helicase1 Helicase_RecD AAA_11 AAA_22 AAA_25 PhoH UvrD-helicase AAA_28 T2SE AAA_5 AAA_29 SRP54 Mg_chelatase Herpes_Helicase AAA_23 NTPase_1 DUF2075 AAA Flavi_DEAD AAA_16 cobW AAA_33 AAA_18 Zeta_toxin CbiA PIF1

Other DBs

NCBI-GI:

433645716

NCBI-GeneID:

14386975

UniProt:

L0IR55

Position

complement(899445..901052)

AA seq 535 aa
MTIELVVDDTGFFAPADVHVAQRLTALAKETDERVALAVALVVRALRGGSVCVDLTSPEM
ADLAAAVKASPLLTGPPALRVDGDLLYLDRYWLEEQQVCDDIRAMVSARPAEVSSNIDRL
FPAGFEEQRAAAEIALSQGLTVLTGGPGTGKTTTVARLLAMLASGNRLRIALAAPTGKAA
ARLQEAVQLEVGKLSPADGEALAGLHATTLHRLLGSRPDTSARFRHNRGNRLPHDVIVVD
ETSMVSLTMMARLLEAVRPDARLILVGDPDQLASVEAGAVLADLVDGLGEARTAALKTSH
RFGKSIGALASAIRVGDADRAIEVLRAGDEHIEWIDAEDPRQKLRNVLVRQAIALRTAAI
LGDEQAALKVLDEHRLLCAHRRGPFGVTQWNRQVERWLTEETGDPIWSSWYAGRPVLVTA
NDYGLGLYNGDTGVTVVRDEALRAVIGDATFATSRLADVETMHAMTIHKSQGSQADEVTV
LLPQEDSRLLTRELFYTAVTRAKERVRVVGSEAALRVAIERRAVRASGLAQRLRE

NT seq 1608 nt +upstreamnt +downstreamnt
atgacgatcgaactggtggtcgacgatacgggcttcttcgcgccggcggatgtgcatgtt
gcgcaacgacttaccgcgcttgccaaggagaccgacgagcgggtcgcgttagccgtcgca
ctggtggtgcgggcgttgcgaggcggctcggtatgcgtcgacctgacgtcgccggagatg
gcggatctggcggcggcggtgaaggccagcccgctgttgaccggcccgccggcgctgcgg
gtcgacggcgacttgctgtacctcgacaggtactggctcgaagagcagcaggtgtgcgat
gacattcgggcgatggtctcggcgcgacccgccgaggtgtcttccaacatcgaccggttg
ttcccggccgggttcgaggagcagcgagcggccgcggaaattgcactgtcgcaaggcttg
acggtgctgacgggtgggcccgggacgggcaagacgacgacggtggctcggttgttggcg
atgctggcaagcggtaatcggctgcggatcgcgttggccgccccgacgggtaaggcggcg
gcgcgcctacaggaagcggtgcagttggaggtcggcaagttgtcgccggcggatggcgag
gcgctggcaggcttgcacgcgacgacgttgcaccggctgctgggcagcaggccggatacg
tcggcgcggttccggcacaatcgcggaaatcggctgccacacgacgtgatcgtggtggac
gagacgtcgatggtctcgctgacgatgatggcccggctgctggaggcggtgcggccggac
gcaaggctgatacttgtcggcgacccggatcagttggcgtcggtggaggcgggcgcggtg
cttgcggatctggtcgatgggctgggtgaggcaaggaccgcggcgctgaagacgtcgcat
cggttcggcaagtcgatcggggcgttggcttcggccattcgggtcggcgatgcggatcgg
gcgatcgaagtgctgcgggctggcgatgagcacatcgagtggatcgacgccgaggatccg
cggcagaagttgcgcaatgtgcttgtccgacaggcaattgcgctgcggacggcggcgatc
cttggcgacgagcaggcggcgttgaaggtgctggacgagcatcggttgttgtgcgcgcat
cgccgggggccgttcggggtgacgcagtggaaccggcaggtcgagcggtggctgacagag
gagacgggcgacccgatctggtcgtcgtggtacgcgggtaggccggtgttggtgacggcg
aacgactatgggctgggcctgtacaacggcgatacgggtgtgacggtggtgcgcgacgag
gcgctgagggcggtcatcggggatgcgacgttcgcgacgagtcggctggcggatgtggaa
acgatgcatgcgatgaccatccacaagagtcagggcagccaggccgatgaggtgacggtg
ttactgccgcaagaggattcacggctgttgacgcgggagctgttctacaccgcggtgacg
cgcgcgaaggagcgggttcgggtggtggggtcggaggcggcgctccgcgtggcgattgag
cggcgggcggtgcgggcgtctggcctggcgcagcggttacgcgagtag

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (29)   
   Pfam (29)   
All databases (38)   

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