KEGG   Mycobacterium smegmatis JS623: Mycsm_05299Help
Entry
Mycsm_05299       CDS       T02423                                 

Definition
formamidopyrimidine-DNA glycosylase
Orthology
K10563  
formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
msa  Mycobacterium smegmatis JS623
Pathway
Base excision repair
Brite
KEGG Orthology (KO) [BR:msa00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    Mycsm_05299
Enzymes [BR:msa01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     Mycsm_05299
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     Mycsm_05299
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
UniProt: 
Position
complement(5257720..5258583)
Genome map
AA seq 287 aa AA seqDB search
MPELPEIEALADHLRRHAVGLTIGRVDVSALSVLKTFDPPINVLHGQTVTGANRWGKYLG
LAVGELHLITHLSRAAWLRWSDKLAAAPLKPGKGPIALRVHLGTPGDAPGFDLTEAGTQK
RLAVWLVDDPMAVPQIAALGPDALSLDPAGLAAALNGNSGRIKTVITDQKVIAGIGNAYS
DEILHVAKLSPFATAGKLTDAQLSALHDAMISVLTDAVQRSVGQQAATLKGEKRSGLRVH
ARTGLPCPVCGDTVREVSFADKSFQYCATCQTGGKVLADRRLSRLLK
NT seq 864 nt NT seq  +upstreamnt  +downstreamnt
atgccggaattacctgagatcgaggcgctggccgatcatctgcgcaggcacgccgtcggg
ctgaccatcggccgcgttgatgtgtcggcgctgtcggtgctcaagacgttcgatccgccc
atcaacgtgctgcacggccagacggttaccggtgccaacaggtggggcaagtatttgggg
ttggcggtcggcgagctgcatctgatcacgcatctgtcacgggcggcttggctgcggtgg
tcggacaagttggccgccgcgccgctcaagccgggcaagggcccgatcgcgttgcgcgtt
cacctcggaactcccggcgacgcaccgggtttcgacctgaccgaggcaggcacgcagaag
cggctggcggtgtggctcgtcgacgatccgatggcggtgccgcagattgccgcactcgga
cccgacgcgctgtcgctggatcccgccgggctcgcggcagcgctgaacggcaacagtggc
cgcatcaagaccgtcatcaccgaccaaaaggtcattgcggggatcggcaacgcgtacagc
gacgagatcctgcacgtggccaagctctcgccgttcgcaaccgcgggcaaattgaccgat
gcgcagctgtctgcgttgcacgacgcgatgatcagcgtcctcaccgatgcggtacagcgg
tcggtggggcagcaagccgcgacgctgaagggggagaagcgctcgggattgcgcgtgcat
gcccgcaccggtctgccgtgtccggtgtgcggcgacacggtgcgcgaggtgtcgttcgcc
gacaagtctttccagtactgcgcgacgtgtcagaccggcggcaaggtgctggccgataga
cggctgtcgaggctgctcaaatag

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