KEGG   Methylocystis sp. SC2: BN69_0607
Entry
BN69_0607         CDS       T02324                                 
Name
(GenBank) DEAD/DEAH box helicase domain protein
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
msc  Methylocystis sp. SC2
Pathway
msc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:msc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BN69_0607
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:msc03019]
    BN69_0607
Enzymes [BR:msc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     BN69_0607
Messenger RNA biogenesis [BR:msc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     BN69_0607
SSDB
Motif
Pfam: DEAD Helicase_C ResIII UTP25 AAA_22 CheB_methylest RecX
Other DBs
NCBI-ProteinID: CCJ06058
UniProt: J7QLP8
Position
complement(653280..654608)
AA seq 442 aa
MTFSDLGLNEILLRALEREGYTTPTPVQAQSIPALLQGRDLLGVAQTGTGKTAAFALPIL
HRLLADKRRPAPNTARALILAPTRELAAQIADSFRSYGHFFRPSVGVIVGGVSHRPQNEM
LARGLDVLVATPGRLLDHLGSGRLRLATTEVLVLDEADHMLDLGFIVPIRQIVAKLPKQR
QTLLFSATMPREISALADDMLRDPAKVSVTPAATTAERVAQHVYLVSGGAKRDLLVELLN
DREISRAIVFTRTKRGADRVAQHLESAGVGADAIHGNKSQSQRLRALDGFRKGRTRVLVA
TDIAARGIDVDGVTHVVNFELPEVAEAYVHRIGRTARAGATGQAISLCDNGERPLLRAIE
KLTRQTLEFTDRRAEGARQDDGDSARPAPKRANSPAPHRNGAQHPRRDGQRPAAKRPGAS
FNGQKRPANGGARHKQANRPQG
NT seq 1329 nt   +upstreamnt  +downstreamnt
atgacattctccgatctcggcttgaacgagatcctgctccgcgcgcttgagcgcgaaggc
tacaccacgccgacgccggttcaggcgcagtccattcctgcgctcctgcaaggtcgcgac
cttctcggcgtcgcccagaccggcaccggcaagacggcggctttcgctctgccgatcctg
caccggctgctcgccgataaaaggcgcccggcgcccaacacggcgcgcgcgctgattctc
gcgccgacgcgggaactcgcggcgcagatcgccgatagtttccgctcgtacggccatttc
tttcgtccaagcgtcggcgtcatcgtcggcggcgtgtcgcatcgtccgcagaatgaaatg
ctggcgcgcggcctcgacgttctggtggcgacgcccgggcgtctgctcgaccatctcggc
agcggccgtttaaggctcgcgacgaccgaagtgctcgttctcgacgaagccgaccatatg
ctcgatcttggatttatcgttccgatccgccagatcgtcgcgaaactgccgaagcaacgc
cagacgctgctgttctcggcgacgatgccgcgcgagatctccgcgctcgccgacgatatg
ctgcgcgatccggcgaaagtctcggtgacgccggcggcgaccaccgccgagcgcgtcgcg
caacatgtctatctggtgtcgggcggcgccaagcgcgacctgctggtggaactgctgaac
gaccgcgagatttcgcgcgcgatcgtgtttacgcgcaccaagcgcggcgccgatcgcgtc
gcgcagcatctggagagcgccggcgtcggcgccgacgcgatccacggcaacaagagccag
agccagcggctgcgcgccctcgacggcttccgcaagggccgcacgcgggtgcttgtcgct
accgatatcgccgcgcgcggcatcgacgtcgacggcgtgacgcatgtcgtcaatttcgaa
ttgccggaagtcgccgaagcctatgtgcatcgcatcggccgcacggcgcgggccggcgcg
accggccaggcgatttcgctctgcgacaatggcgaacggccgttgctgcgcgccattgaa
aagctgacgcgtcagacgcttgaattcactgaccggcgcgccgaaggcgcccgccaggat
gacggcgactccgcgcgcccggcgcccaagagggcgaattcgccggcgccgcatcgaaac
ggcgcgcagcacccacggcgcgatggacagcgtcccgccgcgaagcgaccgggcgcctcg
ttcaatggtcagaagcgccccgcaaatggcggcgcgcgtcacaagcaggcgaaccgtccg
cagggataa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (22)   

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