KEGG   Metallosphaera sedula DSM 5348: Msed_1752
Entry
Msed_1752         CDS       T00509                                 
Name
(GenBank) protein of unknown function UPF0027
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
mse  Metallosphaera sedula DSM 5348
Brite
KEGG Orthology (KO) [BR:mse00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:mse03016]
    Msed_1752
Enzymes [BR:mse01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     Msed_1752
Transfer RNA biogenesis [BR:mse03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    Msed_1752
 Prokaryotic type
   tRNA splicing ligases
    Msed_1752
SSDB
Motif
Pfam: RtcB
Other DBs
NCBI-ProteinID: ABP95907
UniProt: A4YHK5
Position
1687634..1689016
AA seq 460 aa
MKVPATVFADDVLIEKMKQDMTLRQATNVACLPGVQESVYVLPDGHQGYGFPIGGIAATS
IDEGGVVSPGGIGYDINCGVRLLRTNLDYSDIKPKLVDIVEELHRSVPSGVGSEGRIKLT
PQELDNLLQEGVKWAVDKGYGWSEDMNNIEQRGSWELADPSKVSQVAKQRGAAQLGTLGA
GNHFLEVQVVDKIYDERIARALGITREGQVTVMVHTGSRGLGHQIASDYLQIMERAMKKY
GIEVPDRELAAIPFESREGQDYFRAMVSGANFAWSNRQLITNWVRESFGKVFKVDPEKLD
LHIVYDVAHNIAKIEEYDIGGKRKKVLVHRKGATRAFPPGSPEIPQEHREIGQVVLIPGS
MGTASYVMAGIPEGRRTWFTAPHGAGRWMSREAAVRNYPANSVVGSLEERGIIVRAATRR
VIAEEAPGAYKDVDRVARVAHEVKIAKLVMRLRPIGVTKG
NT seq 1383 nt   +upstreamnt  +downstreamnt
atgaaggtaccagcaactgtgttcgcagatgacgtactcatcgagaaaatgaaacaggac
atgacgctgagacaggcaactaacgtagcctgtcttccaggagtccaagaatctgtttac
gtgcttcccgatggccaccagggatacggattccccatagggggaattgctgccacgtcc
atagatgagggaggagtagtcagcccaggcggaataggatatgatataaactgtggagtt
aggttgttaaggactaacctagattattctgacattaaaccgaaactagttgatattgtg
gaagagcttcacaggagcgtccccagcggggtaggaagcgagggcaggataaagctcacc
cctcaggagctggacaacctcctacaggagggcgttaagtgggcagtggataagggttat
ggatggagtgaggatatgaataacattgaacaaaggggtagttgggaactagctgatcct
agtaaggtaagtcaagtggcaaaacagaggggagccgcacagctgggaactctaggggct
ggaaatcacttccttgaagtacaggtcgtggataagatatatgacgagaggatagctagg
gccctcggaataacaagggaagggcaagttactgtcatggttcacacgggatctaggggt
ttaggtcatcagatagccagtgattacctgcaaataatggaaagagccatgaagaaatat
ggaatagaggtaccagatagggaactggcagcgattccctttgagagcagggagggacag
gactatttcagggcgatggtgtctggagctaactttgcctggagtaacaggcaactaatt
accaactgggtgagggagagcttcggcaaggtgttcaaggtagatcctgagaagttggac
cttcacattgtgtatgatgtggcccataacatagccaagatagaggagtacgacataggc
gggaaaaggaagaaggtcctggttcacaggaagggtgcgaccagggcattcccaccagga
agccctgaaatcccacaggaacacagggaaatagggcaagtagttcttattccaggaagc
atgggaacagcaagttacgtaatggctggaatacctgagggtagaaggacctggttcact
gccccgcatggtgcgggaagatggatgtcgagggaggctgcagtgagaaactaccctgcc
aactcagttgtgggatcccttgaggagaggggtataatagtgagggctgccacacgtagg
gttatagctgaggaggcacccggtgcatacaaggacgtagatagggttgcgagggtagct
cacgaggttaagatagctaagctagttatgaggcttagacccataggggtgaccaagggt
tga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (14)   

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