KEGG   Methanobrevibacter smithii: Msm_0666
Entry
Msm_0666          CDS       T00539                                 
Name
(GenBank) conserved hypothetical protein Msm_0666
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
msi  Methanobrevibacter smithii
Brite
KEGG Orthology (KO) [BR:msi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:msi03016]
    Msm_0666
Enzymes [BR:msi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     Msm_0666
Transfer RNA biogenesis [BR:msi03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    Msm_0666
 Prokaryotic type
   tRNA splicing ligases
    Msm_0666
SSDB
Motif
Pfam: RtcB DDE_1
Other DBs
NCBI-ProteinID: ABQ86871
UniProt: A5UKZ3
Position
complement(644664..646112)
AA seq 482 aa
MSIKDNIKKVRDNVYEVPGSVNKKMRASGRLYLDDESFEALEDGAIDQIVNIACLPGVHR
YAIGLPDIHFGYGFPIGGVAAFNEKNGIVSPGGVGFDINCGVRLIKTNLKQADIEDKLDE
LIEALFKNIPSGVGSKGKIKLKENEIDDVLNFGAEWAVENGYGWKEDLEVLEENGRIKEA
DSAKVSDKAKRRGIPQLGSLGSGNHFLEIQVVDEIYNDEVAGVYGLEKGMVVIMIHSGSR
GCGHQVCSDYLRVMDKAYKNHQIDLADRQLACAPFDSREAQDYLKAMYAAANYAWANRQM
MTHWIRETFEDILGKSAKDMEMDIVYDVAHNIAKQETHKFKGNDIKLVVHRKGATRAFGP
GSEEIPEKYREVGQPVLIPGTMGTASYVLHGTQTAMEETFGSTAHGAGRVLSRSQAKKDY
KPEEIKNTLAANGVKIRATTENVIAEEAPGAYKDVDSVVKISDSTGIAKLVAKVKPLAVT
KG
NT seq 1449 nt   +upstreamnt  +downstreamnt
atgagtattaaagataacattaaaaaagttagagataacgtatacgaagttccaggaagc
gttaataaaaaaatgagagcttctggaagattgtatcttgatgatgaaagttttgaagct
ttggaagatggggctattgaccagattgtaaatattgcatgtcttccaggtgttcacaga
tatgcaatcggtctgcctgacattcatttcggatatggatttccaataggtggggtggca
gcattcaatgaaaaaaatggaattgtctctcctggaggagtaggttttgacattaactgt
ggagtcagattaataaaaaccaatcttaaacaagcagacattgaagacaagcttgatgaa
ttaattgaagcattgtttaaaaacattccgtctggtgtaggaagcaaaggaaaaatcaag
cttaaagaaaatgaaatagatgatgttttaaatttcggagctgaatgggctgtagaaaat
ggctacgggtggaaagaagatttggaagttttagaagaaaacggaagaatcaaagaagca
gactcagctaaagtcagtgacaaagctaaaagaaggggaatacctcaacttggttcttta
ggttctggaaatcactttttagaaattcaggttgttgatgaaatatataatgatgaagtg
gctggtgtatacggacttgaaaaaggaatggttgtaataatgattcacagcggttcaaga
ggctgcggacatcaggtatgttctgattatttaagagtaatggataaagcttataaaaat
caccaaatagatcttgcagacagacaactggcctgtgcaccatttgattcaagggaagct
caggactacttaaaagctatgtatgctgcagctaattatgcatgggcaaacagacagatg
atgactcattggataagggaaacctttgaagacattttaggaaaatccgctaaagatatg
gaaatggacattgtttatgatgtagctcacaacattgctaaacaggaaacacacaaattc
aaaggcaatgacattaaactggtggtacacagaaaaggagctacccgtgcattcggacct
ggaagtgaagaaattcctgaaaaatacagggaagttggtcagccggtattgattcctgga
acaatgggaacagcatcctatgtattgcatggaacacaaacagcaatggaagaaacattc
ggatccactgcacatggtgccggaagagttttatcaaggtcacaggctaaaaaagactac
aaacctgaagaaatcaaaaacactttggctgcaaacggagtaaaaatcagagctacaact
gaaaatgtaatagctgaagaggcacctggggcatacaaagatgtggacagtgtagttaaa
atatctgacagtacaggaatagctaaacttgttgcaaaagtaaaaccgttagctgttaca
aaaggataa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (42)   
   KEGG ORTHOLOGY (1)   
   RefGene (39)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (50)   

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