KEGG   Methanosarcina siciliae C2J: MSSAC_3013
Entry
MSSAC_3013        CDS       T03863                                 
Name
(GenBank) putative exosome complex RNA-binding protein 1
  KO
K03679  exosome complex component RRP4
Organism
msj  Methanosarcina siciliae C2J
Pathway
msj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:msj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MSSAC_3013
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:msj03019]
    MSSAC_3013
Messenger RNA biogenesis [BR:msj03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     MSSAC_3013
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     MSSAC_3013
SSDB
Motif
Pfam: KH_6 ECR1_N KH_1 RRP4_S1 RRP40_S1 S1 KH_2
Other DBs
NCBI-ProteinID: AKB37603
UniProt: A0A0E3PS36
Position
3722440..3723222
AA seq 260 aa
MDKKIVIPGDLLSENQKKAGYGTYIKNDKIYSSLCGIENLKEDKVGVIPLAGAYIPSAND
VVIGIVIVVTPSNWIFDIAAPYDGLLHVSEYPRRVESREMPEILGVGDSVILRVKDVDSS
MKVELALRDPSLHKLKTGQIIKVESVKVPRVIGHGGSMISMLKKETNCSIFVGQNGRIWI
DGKDEDIELLSKALRKIEIEAQRSGLTDRIYNFLKNERIRQKESKPVEFFKKETEGVTAT
KEDHSEEIYRKIDVLLDPKN
NT seq 783 nt   +upstreamnt  +downstreamnt
atggataaaaaaatagtgatccctggtgacctgttatccgagaaccagaaaaaagccgga
tacgggacgtatatcaagaacgacaagatctattcttcgctttgcggtattgaaaacctc
aaagaggataaagttggagtgatcccacttgcgggagcgtatatcccctcagcaaatgat
gtggtgatagggatcgttattgtggttactccatccaactggatatttgatattgcagct
ccttatgacggtctgctccacgtatccgagtatccgagaagagtcgaatcccgggaaatg
cctgaaattctgggcgtaggcgactctgtaatcctcagggttaaagatgtagacagctcc
atgaaagtcgagcttgccctgagggatccgagccttcataaactcaaaacaggtcagata
attaaagttgagtctgtaaaagtcccccgtgtaataggacacggcggttccatgatatcc
atgctgaagaaagagacaaactgcagcattttcgtaggccagaacggcagaatatggatc
gatgggaaggacgaggacatagaacttttgagtaaggctctccggaaaatagaaattgaa
gcccagcgttccggattgacagaccggatctataattttttgaaaaatgaacggattaga
cagaaagagtccaagcctgttgagttttttaaaaaagagacggaaggtgtgactgcaaca
aaggaagatcattccgaagagatataccggaagatcgatgtactgctggacccgaagaat
tga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (15)   

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