KEGG T00802: Msil

Methylocella silvestris: Msil_1736

Entry

Msil_1736 CDS T00802

Gene name

ligD

Definition

ATP-dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

msl Methylocella silvestris

Pathway

msl03410	Base excision repair
msl03420	Nucleotide excision repair
msl03430	Mismatch repair
msl03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:msl03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:msl03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:msl03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:msl03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_C DNA_ligase_A_M

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(1886469..1889135)

AA seq 888 aa
MADTKLKTYRAKRDFAQTAEPSGEAPIAAGPRRRFVIQKHAATRLHYDLRLELDGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGVIPKGQYGGGTVQLWDRGFWAPEGDKTPE
QALADGDLKFTLDGQRLYGSWVLVRMKADRTGGKRTNWLLIKHRDGYARDGDADALLAED
RSVASGRAMAAIAAGKGKGPKPFMLAGEQAADPKAVWDSNKGLAAEARAAPKATRKKSGA
ALAQMPDFLPPQLCQPVERPPSGDGWVHEIKFDGYRMQLRVAGGKATLKTRKGLDWTDKF
AAIAAEAADFPDAIIDGEIVALDSSGSPDFVALQAALSEQNTDDLIFYAFDLMFEGGRDL
RLEPLAARKQALARLIAGARLGAGALIRFVEHFETGGDAILQSACRLNLEGIVSKKRDAP
YQPGRSDSWTRAKCRAGHEVVIGGWTTTEGKFRSLLAGVHHGENFTYIGRIGTGFGEAKV
KTLLPKLKQFAAETSPFTGPSAPRKTASIHWLKPELVAEIEFAGFTGAGMVRQAAFKGLR
EDKPAEEVEAETPAPPEQAAVPDPAEIQASARSSSDKPMATANGKPIVMGVAISNPAKEL
WPADGAEAPVSKLDLARYYEAAGPWLIEHVRGRPCSLIRAPDGITGQQFFQRHAMAGASN
LLDLVTVSGDRAPYLQIDRVEGLAAVAQIAGLELHPWNCAPGRPETPGRLIFDLDPGPDV
AFEQVAAAALEMRDRLDALGLVSFCKTTGGKGLHVVTPLAVAKGSKLTWPEAKGFAQEVC
RRMAADNSNAYLLNMSKKLRAGRIFLDYLRNDRMSTAVAPLSPRARPGATVSMPLNWSEA
TNSLDPKAFTIRTSVGLLDKSKAWADYDSGARPLEAAIKRLGRAKAAA

NT seq 2667 nt +upstreamnt +downstreamnt
gtggcggacaccaagctcaaaacctatcgcgccaagcgcgactttgctcaaacggcggaa
ccgagcggagaggctccgatcgcggccggaccgcgtcggcgcttcgtcatccagaaacat
gccgcaacccggctccattacgatcttcgactggagctcgacggagtcttcaaatcatgg
gctgtcaccaagggcccctcgctcgatccgcatgacaagcgccttgcagttgaggtcgag
gatcatccgctcgactatggcgatttcgaaggcgtgatccccaaaggccaatatgggggc
ggcacggtccagctgtgggatcgcgggttctgggcgccggagggcgacaagacgcctgaa
caggcgctggccgacggcgatctcaaattcacgctcgacggccaaaggctgtatggcagt
tgggtgctcgtgcgcatgaaggccgaccgcacgggcggcaaacgaaccaattggctgctc
atcaaacatcgcgacggctacgcgcgggatggcgacgccgacgctctgctggcggaggac
cgctccgtcgcttcgggccgcgcgatggcggcgatcgcggccggcaagggcaaggggcca
aagcctttcatgctcgcgggcgagcaagccgccgatccgaaagcggtgtgggactcgaac
aaggggctcgccgccgaggcgcgcgcggcgcccaaggccacgcggaaaaaatctggcgcg
gctttggcgcaaatgccggatttcctgccgccgcagctttgccagccggtcgagcggccg
ccttcgggcgacggttgggttcatgaaatcaaattcgacggctatcgcatgcagcttcgc
gtcgccggcggcaaagcgacgctgaaaacgcgcaaggggctggactggaccgataaattc
gcggcgatcgctgcggaggcggcggatttccccgacgctatcatcgatggcgagatcgtc
gcgctggatagctcgggctcgcccgatttcgtggcgctgcaggcggcgctttcagaacag
aataccgatgatctgattttctacgccttcgacctgatgttcgagggcgggagagatttg
cggctcgagccgctcgccgcgcgcaagcaggcgttggcgcgtctcatagccggcgcgcgg
cttggcgcgggcgcgctgatccgtttcgtcgagcacttcgagaccggcggcgacgcgatt
ttgcaatccgcctgccgcctcaatctggaaggcatcgtttcaaagaaacgcgacgcgccc
taccagcccggccgctccgacagctggaccagggcgaagtgccgcgccggccacgaggtg
gtgatcggcggatggacgaccacggaggggaaattccgctccctgttggcgggcgtccat
cacggcgagaatttcacctatatcggccgcatcggaacggggttcggcgaagccaaggtc
aaaaccctgctgccgaagctgaagcagttcgcggcggagacatcgcccttcaccgggccg
agcgcgccacgcaaaaccgcttcgatccattggctgaagccggagctcgtcgccgagatt
gagtttgcggggtttacaggcgccggcatggtgcggcaggcggccttcaaagggctgcgc
gaagacaagccggccgaagaggtcgaagccgagacgccggccccgccggagcaagctgct
gttcccgatcccgcagagattcaggcgagcgcgcgttcatcctcggataagcccatggcg
acggccaacggcaaacccatcgtcatgggcgtcgccatctccaacccggcgaaggagttg
tggccggctgacggcgccgaagctccggtctcgaaactcgatctggcgcgctattacgaa
gcggccggtccctggctcatagagcatgtgcgcggcaggccttgctcgctcatccgcgcg
cccgacgggatcactggccagcaattctttcagcgccacgccatggccggagcctcgaac
ctgctcgatcttgtgaccgtgtcgggcgatcgcgcgccctatctgcagatcgaccgtgtt
gagggattggcggcggtggcgcaaatcgctgggcttgagctgcatccgtggaactgcgcg
ccggggcgcccggagacgcccgggcggctgatattcgatctcgaccccggccccgacgtc
gccttcgagcaggtggcagccgccgctcttgagatgcgcgacaggctcgacgcgctgggg
ctcgtcagtttctgcaagacgacgggcggcaaggggctgcatgtcgtcacgccgctggcg
gtcgccaagggctccaaactcacctggcccgaggcgaaggggttcgctcaggaggtctgc
cggcgcatggccgcggacaattcgaacgcctatctcctcaacatgtccaaaaagcttcgc
gcggggcgtattttcctcgactacctgcgcaatgaccgcatgtcgacggccgtcgcgccg
ctgtcgccacgcgcgcgtccgggcgccacggtttcgatgccgctgaactggagcgaggcg
accaacagcctcgatccgaaagcctttacgatccgcacgtccgttgggcttctcgacaag
agcaaagcctgggccgactatgattcgggcgcgcgtccgctggaggcggcgatcaaacgc
ctcggccgcgccaaggcggccgcgtga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-MSL (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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