KEGG   Methylocella silvestris: Msil_3671
Entry
Msil_3671         CDS       T00802                                 
Name
(GenBank) excinuclease ABC, B subunit
  KO
K03702  excinuclease ABC subunit B
Organism
msl  Methylocella silvestris
Pathway
msl03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:msl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Msil_3671
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:msl03400]
    Msil_3671
DNA repair and recombination proteins [BR:msl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Msil_3671
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Msil_3671
SSDB
Motif
Pfam: UvrB_inter UvrB Helicase_C ResIII UVR DEAD AAA_30 AAA_22 UB2H SWI2_SNF2 AAA_16 Microtub_bd DUF87 Kinesin
Other DBs
NCBI-ProteinID: ACK52555
UniProt: B8EJ63
Position
4030345..4032984
AA seq 879 aa
MSKPPQSSVPAKRAAAKATKTPRSKASKPEVKPLGEHLAALLNPALNQKQPGFAEAPAAY
EASPVSRIDAQLAESLGRSPDRGANGSSAPLYQPPGLSGAVATVESLKDLLERGDPNLRE
KTPWTPHRPDRPDKSEGGVKFKLVSEYEPKGDQPAAIEELVKGIAAHERDQVLLGVTGSG
KTFTMAQVIQRTNRPALVLAPNKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPR
SDTYIEKESSINEQIDRMRHAATRALLERDDVIIVASVSCIYGIGSVETYTAMTFTVKAG
ERIDQRQLIADLVALQYKRSAGDFSRGVFRVRGDTIDLFPAHYEDRAWRINFFGDSIETI
SEFDPLTGKKTQDLEFVKIYANSHYVTPRPTLLQSIKGIKIELKQRLAELYAGGRLLEAQ
RLEQRCMFDLEMLEATGSCAGIENYSRYLTGRRPGEPPPTLFEYLPDNALVFTDESHVTV
PQIGAMYRGDFRRKATLAEYGFRLPSCLDNRPLRFEEWEAMRPQTIHVSATPGSWEMERT
GGVFVEQIIRPTGLIDPPVEIRPARSQVDDLLGEVREVALRGYRSLITVLTKRMAEDLTE
YLHEHGVRVRYMHSDIDTIERIEIIRDLRLGAFDALVGINLLREGLDIPECSLVAILDAD
KEGFLRSETSLVQTIGRAARNIDGKVILYADRETGSMQRAIAETSRRRDKQTAYNLEHGI
TPASIKRGIQDILGSVYERDHVTVDAGLVGAQSLVGHNFKATVTDLEKRMRAAAADLDFE
EAARLRDELKRLQAVELAISADPMTSQRDVEASAGSYAGERKYGAAANMPANRPHKPTDN
EMGPHNFGGGEAKPRAGARPAPRSTGGKGGTRVFKGKAR
NT seq 2640 nt   +upstreamnt  +downstreamnt
atgtcgaagccgccccaatcttccgtccccgccaagcgcgccgccgccaaggcgacgaaa
acgccgcgctccaaggcctcgaagcccgaggtcaagccgctcggcgaacatcttgccgcc
ttgctgaacccggcgctgaaccagaagcagccgggtttcgccgaggcgcccgccgcctat
gaagcgagcccggtctcccgcatcgacgcgcagcttgccgaatcgcttggccgttctccc
gaccgtggcgcgaacggatcttcggctccgctctatcagccgccgggcctcagcggcgcc
gtcgccaccgtcgaatccttgaaagatctgctggagcgcggcgaccccaatctgcgcgag
aaaacgccctggacgccgcatcggcccgaccgccccgacaagagcgaaggcggcgtcaag
ttcaagctcgtctccgaatatgagccgaagggcgatcagccggcggccatcgaagagctg
gtcaagggcattgcggcgcatgagcgcgatcaggttctgctcggcgtcacaggctcgggc
aagaccttcaccatggcgcaggtgatccagcggaccaaccgcccggcgctggtgctcgcc
ccgaacaagaccctcgcggcgcagctctacggcgaattcaaaagcttctttccggacaac
gccgtcgaatatttcgtctcttactatgattactatcagccggaagcctatgtgccgcgc
tccgacacctatatcgagaaggaaagctcgatcaacgagcagatcgaccgcatgcgccac
gccgcgacgcgcgcgctgctggagcgcgacgatgtcatcatcgtcgcctcggtgtcctgc
atctatggcatcggctcggtcgaaacctatacggcgatgacctttacggtgaaggccggc
gagcggatcgaccagcgccagctcatcgcggatctcgtcgcgctgcaatacaagcgctcg
gccggcgatttttcgcgcggcgtgtttcgcgtgcgcggcgacaccatcgacctctttccc
gcccactatgaggaccgcgcctggcgcattaatttctttggcgattcgatcgagacgatt
tcggaattcgatccgctgaccgggaaaaaaacgcaggatctcgaattcgtcaaaatctac
gccaattcgcattatgtgacgccgcggccgaccctgttgcagtcgatcaagggcatcaag
atcgagctgaagcagcgtctcgccgagctttacgcgggcgggcgcctgctcgaggcgcaa
aggctcgaacagcgctgcatgttcgatctcgaaatgctggaggcgacgggctcctgcgcc
ggcatcgagaattattcgcgctatctcaccggccgccgccccggcgagccgccgccgacc
ttgttcgaatacctacccgacaacgccctcgtcttcaccgatgaatcgcatgtgacggtg
ccgcagatcggcgccatgtatcgcggcgatttcaggcgcaaggcgacgctggccgaatat
ggctttcgcctgccgtcctgcctcgacaacaggccgctgcgcttcgaggaatgggaggcg
atgcggccgcaaaccatccatgtctcggcgacgccgggctcatgggaaatggagcgcacg
ggaggcgtcttcgtcgagcagatcatccgcccgaccggcctcatcgacccgccggtcgag
atccgtcccgcccgcagccaggtcgacgatctgcttggcgaagtgcgcgaagtggcgctg
cgcggctatcgcagcctgatcaccgtgctgaccaagcggatggccgaagacctcaccgaa
tatctgcatgagcatggcgtgcgcgtgcgctacatgcattcggatatcgacaccatcgag
cgcatcgagatcatccgcgatctgcggctcggcgccttcgacgcgctggtcggcatcaat
ctgctgcgcgaggggctcgacatcccggaatgcagcctcgtcgccattctcgacgccgac
aaggaggggttcttgcgcagcgagacctcgctggtgcagaccatcggccgcgccgcgcgc
aatatcgacggcaaggttatcttgtatgccgatcgcgagactggatcgatgcagcgcgcc
atcgccgaaacctcgcggcggcgcgacaagcagacggcctataatcttgagcacggcatc
acgccggcctcgatcaagcgcggcattcaggacattctgggctcggtctatgagcgcgac
catgtgacggtcgacgccggcctggtcggggcgcagtcgctcgtcggccataatttcaag
gcgacggtcacggacctcgaaaagcgcatgcgcgccgccgccgccgacctcgatttcgag
gaggcggcccgtctgcgcgacgagttgaaacggctgcaggcggtggagctcgcgatcagc
gccgatccaatgacgagccagcgcgacgtggaggcctcagccggctcctatgccggcgag
cgcaaatatggcgcagcggcgaacatgccggccaatcggccgcacaagccgaccgacaac
gagatggggccgcataatttcggcggaggggaagccaagccgcgggccggggcgcggccg
gcgccaagaagtacgggagggaaggggggaacgcgggttttcaaggggaaggcgcggtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (14)   
   Pfam (14)   
All databases (34)   

Download RDF
DBGET integrated database retrieval system