KEGG T00802: Msil

Methylocella silvestris: Msil_3719

Entry

Msil_3719 CDS T00802

Gene name

ligC

Definition

ATP-dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

msl Methylocella silvestris

Pathway

msl03410	Base excision repair
msl03420	Nucleotide excision repair
msl03430	Mismatch repair
msl03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:msl03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:msl03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:msl03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:msl03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

4077835..4078860

AA seq 341 aa
MTQTSPDDRPVFGIPVETAPMEARLADLLPEDSAWQYEPKWDGFRCLAFRAGEDLELRAK
SGKPLQRYFPEVAAYLRQIPAGRFVVDGELIIEIDGEFSFAALQARLHPAASRIRRLSGE
TPARFILFDMLVDAEGAVLIGEPLLTRRRALEAFMARAGAPSRQLELSPVTLDPKKAHRW
LEDSRRGAIDGVMAKRRDGFYEPGARAMIKVKRKRTADCVVGGFRYAANSRKVGSLLLGL
YDDAGKLDHVGFTSAISEAERQALTEKLEALRGPPGFTGRAPGGPSRWSTERSSKWEPLR
PELVVEVCFDQVTDGRFRHGTRLMRWRPDKSPRQCKMAQLN

NT seq 1026 nt +upstreamnt +downstreamnt
atgacgcaaacatcgccagatgaccggccggtgtttggcattcccgtcgagacggccccg
atggaggctcgcctcgccgacctgctgccggaagattcggcttggcaatatgagccgaaa
tgggacgggtttcgctgtctcgccttccgggcgggcgaagacctcgaactcagggcgaaa
tcgggaaagccgctgcaacgatatttcccggaggtcgccgcctatctgcgtcagattccc
gccgggcgcttcgtcgtcgatggcgaactcatcatcgaaatagacggcgaattttccttc
gcggccctgcaggctcggctgcatccggcggcctcccgtattcgaaggctctccggcgaa
acgccggcccgcttcattctattcgacatgctggttgacgccgagggcgccgttctgatc
ggcgagcctctactgacgcggcggcgggcgctcgaagcttttatggcgcgggccggcgcg
ccatcgcgtcagctggagctttcgcccgtcacgctcgaccccaagaaggcgcatcgatgg
ctcgaggactcgcggcgcggcgcgatcgacggcgtgatggcgaagcgccgcgacgggttc
tatgagcccggcgcgcgcgccatgatcaaggtcaagcgcaagcgcacggccgattgcgtc
gtcggcggatttcgctacgcggccaattcgcgcaaggtcggctccttgcttctcggcctc
tacgacgatgccgggaagctcgatcatgtcggcttcacctccgcgatcagcgaggcggag
cggcaagctttaacagagaagctcgaagcgttgcgcgggccgcccggcttcaccggccgc
gcgcccggcggccccagccgttggagcacggagcggagctccaaatgggagccgctgcgg
ccggaactggtggtcgaagtatgtttcgatcaagtcaccgatgggcgctttcgccatggg
acaaggctcatgcgctggcggcccgataaatcgccgcgccaatgcaagatggcgcaattg
aactga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-MSL (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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