KEGG   Mycolicibacterium gilvum Spyr1: Mspyr1_16570
Entry
Mspyr1_16570      CDS       T01376                                 
Name
(GenBank) DNA/RNA helicase, superfamily II
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
msp  Mycolicibacterium gilvum Spyr1
Pathway
msp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:msp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Mspyr1_16570
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:msp03019]
    Mspyr1_16570
   03009 Ribosome biogenesis [BR:msp03009]
    Mspyr1_16570
Enzymes [BR:msp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Mspyr1_16570
Messenger RNA biogenesis [BR:msp03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Mspyr1_16570
Ribosome biogenesis [BR:msp03009]
 Prokaryotic type
  rRNA helicases
   Mspyr1_16570
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 HEM4 UvrA_inter AAA_19 Flavi_DEAD
Other DBs
NCBI-ProteinID: ADT98324
UniProt: E6TN21
Position
1681708..1683393
AA seq 561 aa
MTSSNAEPDPADLTFADLQIHPAVLKAVADVGYESPSPIQAATIPAMLEGSDVVGLAQTG
TGKTAAFAIPILSKIDTESRNTQALVLAPTRELALQVAEAFGRYGAQLRVNVLPIYGGSS
YVPQLAGLKRGAQVVVGTPGRVIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERIL
ADTPEYKQVALFSATMPPAIKKITAKYLHDPVEVTVKSKTQTAENITQRYFLVSYPRKMD
ALTRLLETEQGDAMIVFVRTKQATEEVAEKLRARGFAASAINGDIPQAVRERTITQLKDG
TIDILVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRER
HLLGAIERVTRQKLVESELPSVDDVNEKRVAKFRDSITDALDKPGIDLFRALVEGYERDH
DVPMADIAAALALQSRNGEEFLMTEPPPEKRRERPDRGDRSDAPRKPRERRSDLATYRIA
VGKRHKVAPGAIVGAIANEGGLHRSDFGHITIKMDHSLVELPAKLPGNTLKALQNTKIQG
QLIQLQPDRGPKPHRGKPPTK
NT seq 1686 nt   +upstreamnt  +downstreamnt
atgacgtcctcaaatgcggagcccgaccccgctgacctgacttttgctgacctgcagatt
caccctgcggtgctgaaggctgtcgccgacgtcggttacgaatcaccttcaccgatccag
gctgcgaccattccggcgatgctggaagggtccgacgtcgtcgggctggcgcagaccggt
accggtaagaccgcggcgttcgcgatcccgatcctgtcgaagatcgacaccgagagccgc
aacacccaggccctggtgctggcgccgacgcgtgagctcgcgctgcaggtcgccgaggct
ttcggccgttacggcgcccaactgcgggtcaatgtgctgccgatctacggcggttcgtcc
tatgtgccgcagctggccgggctcaagcgcggcgcgcaggtcgtggtcggcacccccggc
cgcgtgatcgaccacctggagaagggcagcctggacctctcgcacctggactatctggtg
ctcgacgaggccgacgagatgctgcagatgggcttcgccgaggacgtcgagcgcatcctg
gccgacaccccggagtacaagcaggtcgcgctgttctccgcgaccatgccgccggcgatc
aagaagatcaccgccaaatatctgcacgatccggtcgaggtgacggtcaagtccaagacc
cagaccgccgagaacatcacgcagcgctatttcctggtgtcgtatccgcgcaagatggat
gcgctgaccaggctgctcgaaacggagcagggcgacgcgatgatcgtgttcgtccgcacc
aagcaggccaccgaggaggtcgccgagaagctgcgggctcgcggattcgccgcctcggcg
atcaacggcgacattccgcaggcggtccgcgagcgcaccatcacccagctcaaagacggc
accatcgacattctggtcgcgaccgacgtcgcggcgcgcggcctggacgtcgaacgcatc
agccacgtggtgaacttcgacatcccgcacgatccggagtcctacgtccaccgcatcggc
cgcaccggacgagcgggccgatcgggcaccgcgctgctgttcgtgacgccgcgcgagcgt
cacctcctcggcgcgatcgagcgcgtcacccggcagaagctggtggagtccgagctgccg
tcggtcgacgacgtcaacgagaagcgggtcgcgaagttccgcgactcgatcaccgatgcg
ctggacaagcccggcatcgacctgttccgcgcgctggtcgagggttacgaacgcgaccat
gacgtgccgatggccgacatcgccgcggcgctggcactgcagagccgcaacggtgaagag
ttcctgatgaccgagccgccgcccgagaagcgccgcgagcgtccggaccgcggagatcga
agtgacgcgccgcgcaagccgcgggagcgccgcagcgatctggcgacgtaccgcatcgcg
gtcggcaagcggcacaaggtggcgcccggcgcgatcgtcggtgccatcgccaacgagggc
gggctgcaccgcagcgacttcgggcacatcacgatcaagatggaccactcgctggtggag
cttccggcaaagttgcccggtaacaccttgaaggcgttgcagaacaccaagattcagggg
cagctcattcagctccaaccggatcgcggtccgaagccgcatcgggggaagcccccgacg
aagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

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