KEGG T00313: Msp

Methanosphaera stadtmanae: Msp_0258

Entry

Msp_0258 CDS T00313

Gene name

lig

Definition

ATP-dependent DNA ligase (EC:6.5.1.1)

Orthology

K10747

DNA ligase 1 [EC:6.5.1.1]

Organism

mst Methanosphaera stadtmanae

Pathway

mst03030	DNA replication
mst03410	Base excision repair
mst03420	Nucleotide excision repair
mst03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; DNA replication [PATH:mst03030]
Genetic Information Processing; Replication and repair; Base excision repair [PATH:mst03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:mst03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:mst03430]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C

Other DBs

NCBI-GI:

84489085

NCBI-GeneID:

3855692

UniProt:

Q2NHF9

Position

321097..322770

AA seq 557 aa
MTNTSYEKLVEVYEKISSTSSRLEKQDIIADFLMYIKETDADITYDITLLLQGKIFPPWS
DKEMGISTQLIIKALSNLLGESTKSIENKLAEVGDMGEISEELIKNNKQVTFFKVPLTVK
KVLSNLRKTESITGSKSQNKKINYLLELYTSASPLEAKYITRTITERLRIGVGEGTLVEA
IAQAYNIDKEIIDRAYMLSNDLGEVASRAQESIESVKSLTITPGKPIKPMLAQLSPGIKE
SITEMKKVICETKYDGIRVQIHHYNNKTKIFTRRLENVTNALPEVVEYIEEALPSKDFIV
EGEVIATKDNKPISFQYILQRVKRKYDIDKMREKIPLKVFLFDVLYYDKPTAELPIIQRR
QLLEEIVTTSKNVELSTMKIVSQENYTEAEKLFTWSIDEGHEGIMFKDVTSPYSPGKRGK
NMLKYKPLRETLDCVITGGTYGKGKRAKFFGSYLLSLLDEKTGEYKTLVHAATGMDDDLL
ASLTKRMEKLIISKSEQNVLFKPKVILEIAYSEIVESNEYESGYSLRFPAIKGVRDDIGL
DEVDTLSKLHQMIDLQK

NT seq 1674 nt +upstreamnt +downstreamnt
atgacaaatacttcttatgaaaaattagttgaggtatatgaaaaaatcagtagtacatca
agtcgtctagaaaaacaagatattatagccgattttcttatgtatataaaagaaactgat
gctgatataacatatgatattactctattacttcaaggtaaaatatttccaccatggagt
gataaagaaatgggtatatcaactcaactaataataaaagcactatccaatctattaggt
gaaagtacaaaatccatagaaaataagttagcagaagtaggggatatgggggaaatatca
gaggaacttattaagaataacaaacaagtaacattcttcaaagtaccattaactgttaag
aaagtactatcaaatcttagaaaaacagaatcaataactggaagtaaatcacaaaacaaa
aaaataaactatcttctagaattatatacttcagcttcacctctcgaggcaaaatatatt
acaagaacaataacagaaagattaaggataggtgtgggtgaaggaacactagttgaggca
atagctcaagcatataatattgataaagaaattattgatagagcatatatgttatcaaat
gatcttggagaagtagcatctcgagcacaagaatccatagaatcagtaaaaagcttaaca
ataacaccaggaaaaccaataaaaccaatgttagcacaattaagtccaggtattaaagaa
agtattactgagatgaaaaaggtaatatgtgaaacaaagtatgatggaataagggttcaa
attcatcattataacaataaaacaaagatatttacaagacgtttagaaaatgtaacaaat
gccctacctgaagtagtagaatatatagaagaagccctaccttctaaggattttattgtt
gaaggagaagtaatagcaacaaaagataacaaaccaatatcattccaatacatacttcaa
cgtgtaaaacgtaaatatgatattgataaaatgagggagaaaatacctttaaaagtattt
ttattcgatgtattatattatgataagccaacagcagaactaccaataattcaaagaaga
caattacttgaagagattgttacaacaagtaaaaatgtggaactaagtactatgaaaata
gtttctcaagaaaattatacagaagcagaaaaattattcacatggtctatagatgaagga
catgaaggtataatgtttaaagatgttacaagtccctattctccaggtaaacgtggaaaa
aacatgcttaaatacaaaccattacgtgaaacacttgattgtgtaataacaggtggaact
tatggtaaaggtaaaagagctaaattctttggatcgtatttattatccttacttgatgag
aaaactggggaatataaaacattagttcatgcagcaacaggtatggatgatgatctctta
gcttcccttacaaaacggatggaaaaactaataatatctaaatcagaacagaacgttctt
ttcaaaccaaaagtaatacttgaaattgcatatagtgaaattgtagaaagtaatgaatat
gaatcaggttattcactacgttttccagcaataaaaggagttcgtgatgatattggtctt
gatgaggtagatactttaagtaaacttcatcagatgatagacttacaaaaataa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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