KEGG   Methanosphaera stadtmanae: Msp_1536
Entry
Msp_1536          CDS       T00313                                 
Name
(GenBank) predicted RNA-binding protein
  KO
K07573  exosome complex component CSL4
Organism
mst  Methanosphaera stadtmanae
Pathway
mst03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mst00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Msp_1536
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mst03019]
    Msp_1536
Messenger RNA biogenesis [BR:mst03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     Msp_1536
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     Msp_1536
SSDB
Motif
Pfam: ECR1_N S1 RRP4_S1
Other DBs
NCBI-ProteinID: ABC57903
UniProt: Q2NE50
Position
complement(1713648..1714229)
AA seq 193 aa
MNHEENEIVLPGEILCTYEEYTPFDWTYVDEGYVKSSIYGRVSVDDVEKTISVISRNAPK
QIKVGDTVIGYVTDVKAHKVLITIKKIVGSNRELVAAYKGYIHISKVSDEYNSTVYDLFK
IGDIVEAEVNSILGPEYIELSTLQDNLGVIKAMCVNCRKYMKLNKKHVLECECGTIDSRK
LSSKYGEYIDESY
NT seq 582 nt   +upstreamnt  +downstreamnt
atgaatcatgaagaaaatgaaatagtattacctggagaaattctatgtacttatgaggaa
tatactccctttgattggacatatgttgatgagggatatgttaaatcaagtatttatggt
agagtatctgttgatgatgttgaaaaaacaatatctgtaatttctagaaatgctccaaag
cagataaaagtaggagatactgttattgggtatgtgactgatgttaaagcacataaagta
ctaattacaattaagaagattgtgggttctaatcgtgaattggttgcagcttataagggt
tatattcatatatcaaaggtatctgatgagtataattcaacagtatatgatttatttaag
ataggggatattgttgaagcagaggtaaactctattttaggtccagagtatattgaatta
tcaactttacaggataatctaggtgttataaaggcaatgtgtgttaattgccgtaaatac
atgaagttaaataaaaaacatgtgttagaatgtgaatgtggaactattgattcacgtaaa
ttatcaagtaaatatggagaatatatagatgaaagttattga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (18)   

Download RDF
DBGET integrated database retrieval system