KEGG   Allomeiothermus silvanus: Mesil_2219
Entry
Mesil_2219        CDS       T01246                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
msv  Allomeiothermus silvanus
Pathway
msv03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:msv00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Mesil_2219
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:msv03019]
    Mesil_2219
   03016 Transfer RNA biogenesis [BR:msv03016]
    Mesil_2219
Enzymes [BR:msv01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     Mesil_2219
Messenger RNA biogenesis [BR:msv03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Mesil_2219
Transfer RNA biogenesis [BR:msv03016]
 Prokaryotic type
  tRNA degradation factors
   Mesil_2219
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 AbiEi_4 SPT16 Rrp44_S1
Other DBs
NCBI-ProteinID: ADH64087
UniProt: D7BIB2
Position
complement(2234698..2237289)
AA seq 863 aa
MTERILEYLRKNPTKTYSLREVQRMLRLEREEVKSALAELVKQGRLIEPRRGLYALPEAK
PAPKRGNKGFVGRLQVHPAGFGFVIPDALAPDQARLPPPEQRDLYIPKEFLGGAWHGDQV
LAYPQPPGRDRRPWGKVAQVLERSRSKLTGRLEFRRGYAWVLPDDPRLPGKVKLEPEGLA
GLEQGARIAVELHFPQTGDKGGEIYATFLEYLGMADDPQSETRAVIVNHDLKSEFDPEAL
AEAEAIPESIPPEEIARRADFRSLNVFTIDGIDAKDFDDAIHVERLEGNRYRIGVHIADV
SHYVREGSALDKEAYERGTSVYLPGRVLPMLPEKLSNGVCSLVPGQDRLVLSVLVEITDG
GRVLRHSFREGVIRSKARLTYTQVQAFAEGKGMPDEFKWLEPDLALLLELTRKLKAKRVA
AGALDFHFTEVKVDIGEAGEIHLIPQTEPDARSLIEELMLLANRIVAKYLSDKGLPALYR
VHEDPTDMAYAKLAAQLSKLGYELPGMEPSPKAMQAILKQVEGKPEAPMVSTLLLRSLKL
ARYAHENLGHFGLAAEHYLHFTSPIRRYPDLIVHRVLKTLMRRRLTPEKVEHWREVFPRM
AEHTSSRERSAEAAERDLTKYYQCCWAELHKGERFGGVVSGVTGFGVFVALENGVEGMVR
LSSLLDDHYEYVEETLSLVGTRTKRRIRIGDPLEVVIQGVNLPTRQIELVPAEFAAVRPS
NTAKPEISREVSRKPVLATTKPSRTKEKNMEGTKKRRVVGPPEGRERRERGPKVTMSRMY
FGEWQKTEDETPPQNRRSGGRSGQHERAGGERSRSSQAGQPRHEARSSQKPPRYAAKEAP
QPQSGNPGERQGKSSRRRRNRWR
NT seq 2592 nt   +upstreamnt  +downstreamnt
atgaccgaacgtatacttgagtatttgcgcaagaaccccaccaaaacctatagcctgcgc
gaggtgcagcggatgctccgcctcgagcgagaagaagtcaagtctgctttggccgagctg
gtaaagcagggcaggctgatcgagccccgccgggggctatacgctttgcctgaggctaaa
cctgccccaaaacgggggaacaaaggctttgtgggccgcctgcaggttcaccccgcgggc
tttggcttcgtcatccccgatgcgctagctcccgaccaggcccggctgccccctcccgag
cagcgcgacctctatatccccaaagagtttttgggtggggcctggcacggcgatcaggtg
ctggcctacccccagccgccgggccgggatcggcggccatggggtaaggttgcccaggtg
ctcgagcgctcgcgcagcaagcttaccggcaggctcgagttccgccggggctacgcctgg
gtgctacccgacgacccccggctgccgggcaaggtcaagctcgagcccgaaggactggct
ggcctcgagcagggcgcgcggattgcagtcgagctgcacttcccgcaaacgggggacaag
gggggcgagatctacgcaaccttcctcgagtacctggggatggccgacgacccccagagc
gaaacccgcgcggtgatcgtcaatcacgacctcaagtcggagtttgatccggaggccctg
gcagaagccgaggctatccctgagtccattccgcccgaagagatcgcccgccgcgccgac
ttccgttccctcaatgtcttcaccatcgacgggattgacgccaaggacttcgacgacgcc
atccacgtggagcggctggagggaaaccgctaccgcatcggggtgcacatcgcggatgtc
tcccactacgtgcgggaggggagtgccttggacaaggaagcctacgagcggggcaccagc
gtctacttgccgggccgggtgctgccgatgcttccggagaagctctctaatggcgtttgc
tcgctggttcctggccaagaccgcctggtgctctcggtgctggtagaaatcaccgacggt
gggcgggtactgaggcacagcttccgggagggggtcatccgctctaaggccaggcttacc
tacacccaggtgcaggccttcgcagagggcaagggaatgcccgatgagttcaagtggctc
gagcccgacctggcccttctcctcgagctaacccgcaagctcaaggccaagcgggtggcc
gcaggagccctggacttccacttcaccgaggtcaaggtagacatcggcgaggcaggggag
atccacctgattccccagaccgagcccgacgcccgcagcctcatcgaagaactcatgctc
ctggcgaaccggattgtggccaagtacctctcggataaggggctaccggccctctaccgg
gtccacgaagaccctacggatatggcttacgccaagttggcagcgcaactctccaagctc
gggtacgagttgccggggatggagcccagccccaaggctatgcaggccatcctcaaacag
gtcgagggtaagcccgaggcccctatggtctcgacattgttgctgcgctcgttgaagctg
gcccgctacgcccacgagaacctaggccacttcggcttggccgccgagcactacctacac
ttcaccagccccatccgccgttaccccgacctgattgtgcaccgggtgctcaagaccctg
atgcggcgcaggctcaccccggagaaggtggagcactggcgcgaggtgttcccccgcatg
gccgagcacacctcgagccgtgagcgctccgctgaagccgccgagcgcgacctcaccaag
tattaccagtgctgctgggccgaactccacaaaggggagcgcttcggcggggtagtctcg
ggggtgaccggcttcggggtgtttgtggcgctcgagaacggggtggaggggatggtgcgg
ctctcgagcctcctcgacgaccactacgagtacgtggaagaaaccctctcgctggtcggc
acccgcaccaagcggcgcatccgcatcggcgaccccttggaggtggtgattcagggcgtg
aacctgcccacccggcagatcgagctggttcccgctgagtttgcggctgtgcgccccagc
aacactgcaaaacccgaaatttctcgagaggtctcgagaaaacccgtcctggctacaact
aagccaagcagaacaaaggagaagaatatggaaggtacaaaaaaacgccgcgtggtcggc
cccccggaaggtcgggagcgccgcgagcgtggccccaaagtcacgatgagccggatgtat
tttggcgaatggcagaagaccgaggacgaaaccccgccacagaaccgtcgctcggggggt
aggagtggccagcatgagcgggccgggggtgaaaggagccgctcgagccaagctggccag
cccaggcatgaggcccggtcatcccagaagcctccccgctacgcggcgaaagaagcgcct
cagccccaaagcggcaatccgggagagcggcagggtaaaagttcgcgccgccgtcggaat
cgctggcgataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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