KEGG   Methanosarcina siciliae T4/M: MSSIT_0548
Entry
MSSIT_0548        CDS       T03865                                 
Name
(GenBank) Heat shock protein 60 family chaperone GroEL
  KO
K04077  chaperonin GroEL [EC:5.6.1.7]
Organism
msw  Methanosarcina siciliae T4/M
Pathway
msw03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:msw00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MSSIT_0548
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:msw03019]
    MSSIT_0548
   03110 Chaperones and folding catalysts [BR:msw03110]
    MSSIT_0548
   03029 Mitochondrial biogenesis [BR:msw03029]
    MSSIT_0548
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:msw04147]
    MSSIT_0548
Enzymes [BR:msw01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.1  Enzymes altering polypeptide conformation or assembly
    5.6.1.7  chaperonin ATPase
     MSSIT_0548
Messenger RNA biogenesis [BR:msw03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     MSSIT_0548
Chaperones and folding catalysts [BR:msw03110]
 Heat shock proteins
  HSP60 / Chaperonin
   MSSIT_0548
Mitochondrial biogenesis [BR:msw03029]
 Mitochondrial protein import machinery
  Matrix
   Other matrix factors
    MSSIT_0548
Exosome [BR:msw04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   MSSIT_0548
  Exosomal proteins of other body fluids (saliva and urine)
   MSSIT_0548
  Exosomal proteins of breast cancer cells
   MSSIT_0548
  Exosomal proteins of colorectal cancer cells
   MSSIT_0548
  Exosomal proteins of bladder cancer cells
   MSSIT_0548
SSDB
Motif
Pfam: Cpn60_TCP1
Other DBs
NCBI-ProteinID: AKB27267
UniProt: A0A0E3P1K4
Position
652702..654312
AA seq 536 aa
MASKQIMFDEGARKALLTGVDKVANTVKITLGPKGRYVVLDKSTKPVVTNDGVTIAKEIE
LHDKFENMGAKLVKEVASKTQDNTGDGTTTATLLAQSMIREGLKNISAGANPIEVKKGIE
LATEKVVGYLKSKSVEVKGKDKIVQVATVSANNDEEIGNLIADAMERVGYNGVITVEDSK
TMETSLDVVEGMQFDRGFVSPYMALDTEKMTCEFEDPYILITDKKINSMKQIVPVLEKVA
SEGRSLLIIAEDVDGDAQAALILNIIRGSLRVCAVKAPGFGNERKEMLEDIAVLTGGQVI
SEEKGMKLEEFSDYMLGSARKVTVDNNKTIIVEGRGDKAKIEDRVRIIEAQVNIAEADYQ
KTGLKKRQAKLGGGVAVIKVGAATETELKEKKMRIDDALNATKAAVEEGVVTGGGVSLFR
AAAVLDDLGLEGDRQVGVKIVRRSIEDPVRQIAANAGREGAEVVATIRAESGECFGYNAK
GDVFEDLFEAGVIDPTKVVRSGLQNAASIAGMVLTTEALVTDFDEEKDDKTAAIII
NT seq 1611 nt   +upstreamnt  +downstreamnt
atggcttcaaagcagataatgtttgatgagggcgcaagaaaagccctcttaaccggtgta
gataaagttgcaaatactgttaagatcaccctgggccccaaaggtcgctacgttgtgctg
gacaaaagcacaaaacccgtggtcacaaatgatggggtcaccattgcaaaagaaatagag
ctccatgacaagtttgaaaatatgggggcaaagcttgtcaaggaggttgcttccaagacc
caggacaacacaggagacgggaccactaccgctaccctccttgcccagagcatgatccgg
gaaggtctgaaaaacatcagtgccggggcaaaccctattgaggtcaagaaagggattgag
cttgcaacggaaaaggttgtggggtatctcaagagcaagagtgtggaagtcaagggcaag
gacaagatcgtacaggtagctaccgtttccgcaaacaatgacgaggaaataggcaacctg
atcgccgatgctatggaaagggtaggctacaacggggtaatcacggttgaagactcaaaa
acgatggaaaccagccttgatgtggttgaaggtatgcagtttgaccgcggctttgtttcg
ccctacatggcacttgatactgaaaaaatgacctgtgaattcgaagacccctatatcctg
attacggacaagaagatcaacagcatgaagcagatcgtgcccgtgcttgagaaggtcgct
tccgaaggccgatccctcctgattattgctgaggacgtcgacggggatgcccaggcagct
ctgatccttaacatcatccgcggatccctgagagtctgcgctgtaaaagctccggggttc
ggaaacgagagaaaggagatgctcgaagatattgccgtcctgaccggcgggcaggtaatc
agtgaagagaaaggcatgaaacttgaggaattcagtgattacatgctcgggagtgccagg
aaggttacggttgacaacaataaaaccataatcgtggaaggcaggggcgataaggcaaag
attgaggacagagtcaggatcatcgaagcccaggtcaatattgccgaagccgactatcaa
aagacaggacttaaaaagcgccaggcaaagcttggaggtggcgttgcggtaatcaaagta
ggtgctgcaactgaaaccgagctcaaggaaaagaagatgaggatcgatgatgccctgaat
gctacaaaagccgcagttgaagaaggtgtggttacgggtggaggagtcagccttttccgg
gcagctgcagtccttgatgacctcggccttgaaggcgacaggcaggtgggcgtaaagatc
gtccggaggtccatagaagatcctgtccgccagatagctgcaaacgcaggcagggaaggc
gccgaagttgtggcaaccataagggccgagtccggtgagtgcttcgggtacaatgcaaag
ggcgacgtctttgaagacctcttcgaagccggcgtaatcgacccgacaaaagtggtaaga
agcgggctccagaatgccgcctcaatcgcaggtatggtgctcacgacggaagctcttgtg
accgattttgacgaagaaaaggacgacaagacagctgcaatcattatctga

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Ontology (6)   
   KEGG BRITE (6)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (14)   

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