KEGG   Mucilaginibacter sp. PAMC 26640: A0256_10075
Entry
A0256_10075       CDS       T04335                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
mup  Mucilaginibacter sp. PAMC 26640
Pathway
mup03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:mup00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    A0256_10075
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mup03021]
    A0256_10075
   03400 DNA repair and recombination proteins [BR:mup03400]
    A0256_10075
Enzymes [BR:mup01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     A0256_10075
Transcription machinery [BR:mup03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     A0256_10075
DNA repair and recombination proteins [BR:mup03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      A0256_10075
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Apocytochr_F_C
Other DBs
NCBI-ProteinID: AMR31743
Position
2315268..2319554
AA seq 1428 aa
MSYKKDNKIKSNFTTITISLASPESILERSSGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHINLVVPVAHIWYFRSLPNKI
GYLLGLPTKRLDLIIYYERYVVIQPGIKESDGISRMDFLTEEEYLDVLDTLPKENQYLDD
KDPQKFVAKMGAEALEDLLKRLDLDQLSYNLRHQAANETSQQRKNEALKRLQVVEAFRDA
KTRIENNPEWMIVKIVPVIPPELRPLVPLEGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVKTEGNRALKSLSDILKGKQGRFRQNLLGKR
VDYSARSVIVVGPNLKLHECGLPKDMAAELFKPFIIRKMIERGVVKTVKSAKKIVDRKDP
LVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLVEGKAIQLHPLTCTAFNADFDGDQM
AVHVPLGNAAILEAQVLMLASHNILNPANGTPITVPSQDMVLGLYYITKGRKTDEGRVVK
GQDLTFYSSEEVIIAYNERKIDLHAFIKVKGKIKERDGNIVSKIIETTVGRVLFNEHVPE
EVGYINELLTKKSLRDIIGEVVKMTGMARAAQFLDDIKELGFKMAFQGGLSFNLKDINIP
EEKVTLIAQASKEVEDVMGNYNMGFITNNERYNQIIDIWTRINNRLTANVMNILSNDNQG
FNSVYMMLDSGARGSKEQIRQLAGMRGLMAKPQKSGSGGEIIENPILSNFKEGLSVLEYF
ISTHGARKGLADTALKTADAGYLTRRLHDVAQDMIVGEVDCGTLRGIYTTALKDNEDIVE
PLYDRILGRTTLHDVHDPITGELLVTAGHDITEEIGKKIENSPLEGIEIRSVLTCESRRG
VCTLCYGRNLASGKRVQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAAESQINAR
FEGIIEFENVRTVEYKTDEENVEVVLGRSGEFRIIEPGTNKIIVTNNIPYGSYLYVKDGA
KIAKGDRICSWDPYNAVIISEFAGITTFEAVLEGITFREESDEQTGHREKVIIDTRDKTK
NPVIQIADSKGNIIKGYNIPVGAHISVEEGEKLQTGQVIAKIPRSTGKTRDITGGLPRVT
ELFEARNPSNPAVVTEIDGVVTLGGVKRGNREITIESKDGQVKKYLVPLSKHILVQDNDF
VKAGMPLSDGSISPADILAIKGPAAVQEYLVNGIQEVYRLQGVKINDKHFEVIVHQMMQK
VAIEDAGDTRFLEREAVDSWDFMIENDEMFDKKVVTEQGDSANLKVGQIVSLRKLRDENS
ILKRKDARLVEVRDAIAATSSPMLQGITRASLGTKSFISAASFQETTKVLNEAAIAGKKD
NMLGLKENVIVGHLIPSGTGLREYENIRVGSQEEFDRLMASKTEEVEA
NT seq 4287 nt   +upstreamnt  +downstreamnt
atgtcttacaaaaaagataataaaatcaaaagtaatttcaccacgattacgatcagttta
gcttctccggaatctattttggagcgttcaagcggtgaagttttgaaaccggagaccatc
aactacaggacttataagcctgagcgtgatggtttattctgcgagcgtatattcggcccg
gtgaaggattacgagtgccattgcggtaaatacaaacgtatccgttacaaaggtatcgtg
tgcgaccgttgcggtgttgaagtaactgagaaaaaagtacgtcgtgagcgtatgggccac
attaaccttgtggtgccagttgcacatatctggtacttccgctcgttgccaaataaaatt
ggttacctgctgggcttaccaacaaaaagactggatctgatcatttactacgagcgttat
gtagtaattcagccgggtattaaagaatctgacggtatttcccgtatggatttccttaca
gaagaagaatacctggatgtattggatactttaccaaaagaaaaccaatacctggatgat
aaagacccacagaaatttgtggctaagatgggtgccgaggctttagaagatttgctaaaa
cgccttgaccttgatcagttatcatacaacctgcgtcatcaggctgcaaatgaaacttca
cagcaacgtaaaaacgaagctttaaagcgtttacaggttgttgaggcgttccgtgatgca
aaaacaaggatagagaacaaccctgagtggatgatcgttaagatcgttccggttattcca
ccagaattgcgtccgttggttccattggaaggtggccgttttgctacttccgatttgaac
gatttataccgccgtgtaattatccgtaacaatcgtttaaaacgtttgatcgagatcaaa
gcaccggaagttattttgcgtaacgaaaaacgtatgttacaggaagctgtagattcgtta
tttgataactcacgtaaagtaaatgcagtaaaaactgaaggtaaccgtgcattgaagtca
ctttcggatatcctgaaaggtaaacaaggccgtttccgtcagaacttgcttggtaaacgt
gtggattattcggcacgttcggtaattgttgtaggtccaaaccttaaattacacgaatgc
ggtttaccaaaagatatggctgctgagttgtttaaaccatttatcattcgcaagatgatt
gagcgtggtgtggttaaaacagtaaaatctgccaaaaagattgttgaccgtaaagacccg
ttagtttgggatattttggaaaacgtattaaaaggccaccctgtattattaaaccgtgcg
cctacactgcacaggttgggtattcaggctttccagccaaaactggtagaaggtaaggca
atacaattgcacccgttaacctgtaccgcctttaacgcggattttgacggtgaccagatg
gctgtgcacgtacccctaggtaacgcagcaattttggaagcccaggtattgatgcttgca
tcacacaacatcttaaaccctgctaacggtacgccaattacagtaccttctcaggacatg
gtgcttggtttgtactacataaccaaaggccgcaaaacagatgaaggacgtgtggtaaaa
ggacaagacttaacgttctattcttctgaagaagtgatcatcgcttacaacgaaagaaag
atcgatctgcacgcctttatcaaggttaaaggaaaaattaaagaacgcgatggtaacatc
gtttctaaaataattgaaactacggtaggccgcgttttatttaacgaacacgtgcctgaa
gaagttggttacattaacgaactattaaccaagaaatcactgcgtgatatcattggtgag
gttgttaaaatgaccggtatggcacgcgcagcacaattccttgatgatattaaggagtta
ggctttaaaatggcattccagggtggtttatcatttaacctgaaggatattaatattccg
gaggaaaaagtgacgctgatcgcccaggcttctaaagaagtagaagatgttatgggtaac
tataacatgggtttcattaccaacaacgagcgttacaaccagatcattgatatctggaca
cgtatcaacaatcgcttaactgcgaatgtgatgaacatcctcagcaacgataaccagggt
ttcaactctgtatatatgatgcttgattcgggtgcgcgtggttctaaagagcagatccgt
cagcttgcaggtatgcgtggtttgatggctaagccgcaaaaatcaggttcaggtggtgaa
attattgaaaaccctattctttcaaactttaaagaaggtttgtcggtattagagtacttt
atttctacccacggtgcgcgtaaaggtttggcggatacggcgttgaaaacagcggatgct
ggttacttaacacgtaggttgcatgacgttgcgcaggatatgatcgttggtgaggttgat
tgcggtaccttacgtggtatctacacaactgcattaaaagataacgaggatatcgttgaa
ccattatacgatcgtattttaggtcgtactacacttcatgatgttcatgacccgattacc
ggcgaactgttggtaactgcagggcatgatatcacggaagaaattggtaagaagatagaa
aattcacctttagaaggtattgagatccgttcggtattaacctgcgaaagccgcagaggt
gtatgtacgttatgctacggccgtaaccttgcaagtggtaaacgcgtgcaaaaaggtgag
gcagtaggtgtaattgcagcacagtcaattggtgagccgggtacacagttaactttacgt
acattccacgtgggtggtaccgcctctaacattgctgctgaatcacagatcaacgcaagg
tttgaaggtatcattgaatttgaaaacgtacgtaccgttgagtacaaaaccgacgaagaa
aatgttgaagtggtgttaggccgttcaggcgaattccgtatcatcgagccgggtaccaac
aaaatcatcgtaaccaacaacattccatacggttcatacctgtatgtgaaagatggtgct
aaaattgctaaaggcgaccgtatctgttcatgggatccgtacaatgcggtgatcatatct
gagtttgccggtattaccacttttgaggcagtattggaaggtatcacgttccgtgaggaa
agtgatgagcaaacaggtcaccgtgaaaaagttattatcgataccagggacaaaactaaa
aacccggttatccagatagctgattcaaaaggtaatatcattaaaggatacaacatcccg
gtaggagcccacatttctgttgaagaaggtgagaaactgcaaaccggacaggttattgcg
aaaatccctcgttcaactggtaaaacacgagatattacaggtggtttaccacgtgtaacc
gagttatttgaagcacgtaacccatctaaccctgctgtagtaaccgagattgacggtgtg
gtaactttaggtggtgtgaaacgtggtaaccgcgagatcactatagaaagtaaagacggc
caggtgaaaaaatacctggtgcctttatctaagcacatccttgtacaggataacgacttt
gttaaagctggtatgccattgtcagacggttctatctctccggcagatatacttgccatc
aaaggccctgcagcagtgcaggagtacttggttaacggtatccaggaagtataccgttta
cagggtgtgaagatcaacgacaagcactttgaggtgattgttcaccagatgatgcagaaa
gttgccattgaagatgcaggtgatactcgtttccttgaaagggaagcagttgatagctgg
gactttatgattgaaaacgacgagatgtttgataagaaggtagttaccgagcaaggtgat
tctgccaacttaaaagtaggtcagattgtttctttaagaaaactaagggacgaaaactca
atcctgaaacgtaaggatgcgagattagtagaggtaagggatgcaattgcagcaacttcc
agcccgatgttacaaggtatcacaagagcatcattaggtaccaaatcgtttatttcagcc
gcatcgttccaggaaactaccaaagtactgaacgaagcagccatagcaggtaaaaaagac
aatatgctgggcttgaaagaaaacgtaattgtgggtcacttaattccgtcaggaacaggt
ttacgcgaatacgaaaatatccgcgtaggttctcaggaagagtttgatcgcctgatggct
tcaaaaactgaagaagtagaagcttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (44)   
   KEGG ORTHOLOGY (1)   
   RefGene (41)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (58)   

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