KEGG   Musa acuminata (wild Malaysian banana): 103986291
Entry
103986291         CDS       T03447                                 
Name
(RefSeq) putative exosome complex component rrp40
  KO
K03681  exosome complex component RRP40
Organism
mus  Musa acuminata (wild Malaysian banana)
Pathway
mus03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mus00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103986291
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mus03019]
    103986291
Messenger RNA biogenesis [BR:mus03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     103986291
SSDB
Motif
Pfam: RRP40_S1 KH_6 Rrp40_N RRP4_S1
Other DBs
NCBI-GeneID: 103986291
NCBI-ProteinID: XP_009402530
UniProt: A0A804HRC5
Position
1:complement(10656398..10661201)
AA seq 241 aa
MNAETSDAPPTSLVDRTVVPGDTVLDLTAMANQTIKLGAGLRQDCDTISVMKAGKLRLSK
PNKYWVESSHKRYAPCVEDTVLGIVVDCKPDNFLVDIKAPTLAFLPVLAFEGGTRRNIPK
FEIGTLLYVRVVKANNSMNPELSCVDETGKASEFGQLKDGYMFETSTGLSRMLLSSPTCP
VLEALGKTLSYEIAVGLNGRVWVNASSPSTVILVSNAIMNSESLSGVQQKIMVEKLMQRL
Q
NT seq 726 nt   +upstreamnt  +downstreamnt
atgaatgcagagacctccgatgccccgccgacgagcctcgtcgacagaaccgtcgtcccc
ggcgacaccgttctggatctcacggccatggcgaaccagaccatcaaattgggagcaggg
ctacgccaggattgcgatacgatatcggtcatgaaggctgggaagctgaggttatcgaaa
ccgaacaagtactgggtcgagagctctcacaaaagatatgcgccgtgtgtggaagataca
gttcttggcattgtggtcgattgtaaaccagataactttctggttgacataaaagctcct
acgttggcatttttacctgtgcttgcatttgaaggtggaactcggagaaacataccaaag
tttgagataggtactttgctatatgtccgggtggtcaaagctaataacagcatgaatcct
gaactttcttgcgtggatgagactggaaaagcttcagagtttggtcagttgaaggatggt
tacatgtttgaaacatcaactggcttatcacggatgctactaagctctccgacatgccct
gttcttgaggctcttggaaagacattgtcgtatgaaatagccgttggtttaaatggccga
gtctgggtaaatgcttcctccccatcgacagtcattctcgtatcaaatgcaataatgaac
tcggaatctttgagtggcgtgcagcaaaagatcatggtggagaaactcatgcagagactt
caatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (22)   

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