KEGG   Musa acuminata (wild Malaysian banana): 103993784
Entry
103993784         CDS       T03447                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:3.6.4.13]
Organism
mus  Musa acuminata (wild Malaysian banana)
Pathway
mus03013  Nucleocytoplasmic transport
mus03015  mRNA surveillance pathway
mus03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mus00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103993784
  09122 Translation
   03013 Nucleocytoplasmic transport
    103993784
   03015 mRNA surveillance pathway
    103993784
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mus03019]
    103993784
   03041 Spliceosome [BR:mus03041]
    103993784
Messenger RNA biogenesis [BR:mus03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     103993784
Spliceosome [BR:mus03041]
 Complex C
  Other components
   EJC/TREX
    103993784
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    103993784
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 YihI
Other DBs
NCBI-GeneID: 103993784
NCBI-ProteinID: XP_009412246
UniProt: A0A804K347
Position
8:complement(3509826..3516976)
AA seq 428 aa
MGEARDNDAYEEELLDYEEEEEKAPDSAAAKASGEAVKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVHIMKHKDILKNECPHIVVGTPGRILA
LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKNFKEGLKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq 1287 nt   +upstreamnt  +downstreamnt
atgggtgaagccagggacaacgatgcttacgaggaggagcttctcgactacgaggaggaa
gaggagaaggcccctgattccgccgctgctaaggcctctggtgaagcggtgaagaagggt
tatgttggaattcacagttcaggtttcagagacttcctgttgaagccagaacttctccgt
gccattgtagattcaggttttgagcacccatccgaagtacaacatgaatgcatccctcaa
gctatccttggaatggatgtcatctgccaagctaagtccggaatggggaaaactgctgtt
tttgttctttcaactctacagcaaattgagcccgttgcagggcaagttgctgcacttgtg
ctatgtcatacaagggaattggcttatcagatctgccacgagttcgagaggttcagcact
tacttgcctgatattaaggttgctgttttttatggtggagttcacatcatgaagcacaag
gatattttgaagaatgaatgcccacatattgtagtcggcacaccaggaagaatactggca
cttgcaagagataaagatctttctttgaagaatgtgaggcactttattcttgatgaatgt
gacaagatgctcgagtcacttgatatgcgtagagacgttcaggagatcttcaaaatgaca
cctcacgacaagcaagttatgatgttctcagcgactctcagcaaggagatccgccccgtg
tgcaaaagattcatgcaagatcctatggaaatatacgttgacgatgaggccaaactgaca
ttgcatggtctagtacagcactacatcaaactaaccgagttggaaaagaaccggaaactg
aatgatcttttggatgcactggacttcaatcaagttgtgatctttgtgaaaagcgtgagt
agagcagcggagctgaacaagttacttgtcgagtgcaacttcccatcaatctgtatccac
tctggcatgtcacaggaggaaaggttgacgaggtataagaatttcaaggaaggtcttaaa
aggattcttgtagctaccgatctggttgggaggggaattgatattgagcgagtcaacatc
gtgataaactatgacatgccagattccgctgacacttatctccacagggttggaagggct
ggtcgttttggtaccaaaggacttgctattacgtttgtttcttcggcttcagactctgat
gttctcaatcaggtgcaagagaggtttgaggtggacattaaggagctgccagagcagatt
gacacttcaacctacatgccgtcgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (41)   
   KEGG ORTHOLOGY (1)   
   RefGene (37)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (57)   

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