KEGG   Musa acuminata (wild Malaysian banana): 103996976
Entry
103996976         CDS       T03447                                 
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
  KO
K12605  CCR4-NOT transcription complex subunit 2
Organism
mus  Musa acuminata (wild Malaysian banana)
Pathway
mus03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mus00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103996976
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mus03019]
    103996976
Messenger RNA biogenesis [BR:mus03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103996976
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     103996976
SSDB
Motif
Pfam: NOT2_3_5_C
Other DBs
NCBI-GeneID: 103996976
NCBI-ProteinID: XP_009416331
UniProt: A0A804KG22
Position
9:3200160..3208992
AA seq 657 aa
MSGLLNTTLNGSASNIPDSTGRPYTTSFSAQSASNPGFHHSGGLQGLHNIHGSFNLPNMP
GSLASRNAVMGGVPSGSVQQPGGNIPSGRFASNNLLVALSQMSHGSGVTNRGGINVVGNH
AFSSSMNGVGGSITGISSNSATGNRNSVPGLGVSPVLGNVGPRLTNSMGNIVGAGNMGRN
INSGGLSIPGLASRVNLASNSGSGSLNLQGPNRLISGMLQQAPQMIGVLGNSYATSGGSL
SQGQGGSNPLSSMGMLNDVNAADSSPFDMNDFPQLSTRPSSAGGPQGQLGATRKQGVGVS
SIVQQNQEFSIQNEDFPALPGLKGGSSDFSVDLHQKEQLHESISSMQSPHLPMARSVGFS
LGGSYPPNRQQQHATSASSGGLPFTPGSNQDLRLNDTEFFPSSHVTYHSQIQNSGSPGIG
LRPLSSPTTASGIGAYEQLIQQYQPPQSPSHFRLQMSDVSQLYRDQSLKSTQGSQVAPDR
FGLQGLLSVIRMNDPDLTSLALGIDLTTLGLNLNSSENLHKTFGSPWSDDPVKGEPEYCI
PSCYYAKPPPLLHQGYFSKLQVSTLFYIFYSMPKDEAQLYAASELCARGWFYHREHQLWF
TRVPNVEPLVKTHAYERGTYVCFDPNTWGTILKENFVLLYEAVEKKPMLPSDRPQLA
NT seq 1974 nt   +upstreamnt  +downstreamnt
atgtctgggctgcttaatacaacccttaatggttcagcatcaaatatccctgactcaacg
ggccgaccctacacgacatcattttctgctcagtcggcttcaaatcctggatttcatcac
tctggtggtttgcaagggctgcataacatccatggaagcttcaacctgccaaacatgcca
ggttcacttgcatcaagaaatgcagtaatgggtggtgttccatcaggcagtgtccagcaa
ccaggcggaaacattcctagtggacggtttgcatcaaacaatcttttggttgcattgtct
cagatgtctcatggttctggtgtcaccaatagagggggtatcaatgttgtcggaaatcat
gcttttagtagtagcatgaatggagttggcgggtcaataactggtatttcctcaaattct
gctaccggcaatcgtaattcagttccaggcttgggagtttctccagttttgggtaatgta
ggcccaagacttacaaactctatgggaaacattgttggtgctggtaacatgggaagaaac
atcaactctggaggattatccattcctggactagcttcccgtgtaaacttagcttccaat
agtggatcagggagcctcaatttacaagggccaaacagactgatcagtggcatgcttcaa
caggcaccacaaatgattggtgtgcttgggaattcttatgctacatcaggaggatcgtta
tctcagggtcaaggtgggagtaacccactaagctctatgggaatgctgaatgatgtcaat
gctgctgacagttctccttttgatatgaatgattttcctcaattaagtacacgaccaagt
tcagctggaggaccacaagggcaactcggtgcaacacggaagcaaggagttggtgttagc
tccattgtccagcaaaatcaggaatttagcatacaaaatgaagattttccagctttgcct
ggattgaaaggcggtagctcagacttttctgtggacttgcatcagaaagaacaacttcat
gaaagtatctcttcgatgcagtcaccacacttacctatggcacgatctgttggatttagc
ttaggaggaagttacccacctaaccgtcagcaacaacatgctacttcagcaagtagtggt
gggctaccttttacacctggaagcaatcaagatcttcgattaaatgacactgagttcttt
ccatcttctcatgtaacgtatcactcacagattcaaaacagtggttctcctggcattggg
ttgagacccttgagctctccaacaacagcttctggtataggagcatatgagcagctcatt
cagcaatatcagcctccgcaaagtccatctcattttcgactacaaatgtctgatgttagt
cagttatatagagaccagagcttaaaatccactcaggggtcacaagtagctcctgatcgg
tttggcttgcagggtttgttaagtgttattaggatgaatgatcccgatctgacatctctt
gcactgggcattgatttaactacattagggttgaacttaaactcatcggaaaatcttcat
aaaacatttggttcgccatggtctgatgacccagtcaagggagaaccagaatattgcatt
ccaagttgttattatgccaaaccaccaccccttctacatcaagggtatttttcgaaactt
caggtgtcaaccctcttttacatcttttatagtatgccgaaggatgaagctcagctttat
gcggcttccgaactatgtgcacgaggatggttctaccacagagagcatcagttgtggttc
acaagagttccaaatgtggaacctcttgttaagactcacgcatatgaaagagggacctat
gtttgttttgatcctaacacatggggaacaattctgaaggagaactttgttttgctttat
gaggcagtggagaagaaaccaatgctcccctctgatcgccctcagctagcttaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (1)   
   Pfam (1)   
All databases (26)   

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