KEGG   Mannheimia varigena USDA-ARS-USMARC-1388: X875_14690
Entry
X875_14690        CDS       T03029                                 
Name
(GenBank) Holliday junction ATP-dependent DNA helicase RuvB
  KO
K03551  holliday junction DNA helicase RuvB [EC:5.6.2.4]
Organism
mve  Mannheimia varigena USDA-ARS-USMARC-1388
Pathway
mve03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:mve00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    X875_14690
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mve03400]
    X875_14690
Enzymes [BR:mve01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     X875_14690
DNA repair and recombination proteins [BR:mve03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     X875_14690
    RecFOR pathway proteins
     X875_14690
SSDB
Motif
Pfam: RuvB_N AAA_lid_4 RuvB_C AAA AAA_5 AAA_22 Rad17 AAA_3 Mg_chelatase TIP49 nSTAND3 AAA_2 AAA_16 AAA_18 AAA_14 AAA_24 AAA_17 RNA_helicase NTPase_1 Bac_DnaA NB-ARC GGDEF_2 AAA_28 bpMoxR TsaE Sigma54_activ_2 ABC_tran
Other DBs
NCBI-ProteinID: AHG80087
Position
1556820..1557824
AA seq 334 aa
MIEADRIISASPKREEEVIDRAIRPKLLADYVGQPSVRDQMEIFIKAAKLRDEALDHLLI
FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSP
AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR
LEFYSVDDLTLIVKRSADCLNLNLSADGAYEVARRSRGTPRIANRLLRRVRDYADVRNNG
IITSEIAKQALVMLDVDSEGFDFMDIKLLQAIVERFDGGPVGLDNLAAAIGEERDTIEDV
LEPYLIQQGFLQRTPRGRIATNRTYAHLGITKID
NT seq 1005 nt   +upstreamnt  +downstreamnt
atgattgaagcagatagaattattagtgcctcgccaaagcgtgaggaagaagtcatcgac
cgtgcaatccgccctaaattgcttgccgattatgttgggcaaccttccgtgcgtgatcag
atggagatcttcatcaaagccgccaaattgcgtgatgaggctctcgatcatttactgatt
tttggtcctcccggtttaggtaaaactacccttgctaatattgtggcaaatgaaatgggc
gtgaatatccgcacgacttccggcccagtattagaaaaagctggcgatttggctgcaatg
ctgactaaccttgagccttatgatgtgcttttcattgatgaaattcaccgcctctctccc
gctattgaagaagtgctttaccccgcaatggaagattatcagctcgatattatgattgga
gaaggtcctgctgcccgctcaattaaacttgatctccccccctttaccttagtgggggca
actactcgagcgggctcactgacctcaccattacgagatcgttttggcattgtacaacga
ttagaattttattcagtggatgatctcacgttaattgtaaaacgcagtgcagattgctta
aatctgaatttatctgcagacggtgcttatgaagtggctcgccgctcacgtggtacacct
cgtattgctaaccgcctacttcgccgtgtgcgagattatgctgatgttcgcaataacggt
atcattacttcagaaattgctaagcaggctttagtaatgcttgatgtagattctgagggc
tttgattttatggacatcaaactactccaagcaattgtagagcgttttgacggtggtcct
gttggtttagataaccttgcagcagcgattggcgaagagcgagacacgattgaagatgtg
ttagagccttacttaattcaacaaggttttttacaacgtactcctagggggcgaattgcc
actaatagaacctacgcacatttaggcatcaccaaaattgattaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (27)   
   Pfam (27)   
All databases (36)   

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