KEGG T03029: X875

Mannheimia varigena USDA-ARS-USMARC-1388: X875_16500

Entry

X875_16500        CDS       T03029

Name

(GenBank) Transcription-repair-coupling factor

K03723

transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]

Organism

mve Mannheimia varigena USDA-ARS-USMARC-1388

Pathway

mve03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:mve00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    X875_16500
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mve03400]
    X875_16500
Enzymes [BR:mve01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     X875_16500
DNA repair and recombination proteins [BR:mve03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      X875_16500

SSDB

Motif

Pfam:

TRCF DEAD UvrB_inter MFD_D3 Helicase_C CarD_TRCF_RID ResIII UB2H ERCC3_RAD25_C RecG_dom3_C DUF6007

Other DBs

NCBI-ProteinID:

AHG80268

Position

complement(1735996..1739442)

AA seq 1148 aa
MSLILLNLPQTGGNFQDHQTLGNLVGHSDILAISQAAQQFNGLTVVVTPDTRTALRLEQS
LSQFANLPVQLFPDWETLPYDNFSPHQDIISARLSALFELQQGRKQIFLLPINTLMQKVC
PPSYLANNVLLIKKGDRFSIQNLRLQLENAGYRAVDQVLEYGEYAVRGAILDLYPMGADE
PFRLDFFDDEIDTIRTFDVDSQRTKAEIDEINLLPAHEFPTDSNGIEHFRSKFRETFGEI
RREPEHIYQQVSKGVLNAGIEYWQPLFFAEMASLFDYLPTNTLFVTYSDIQQKAEQFQKD
TQNRFESRRVDPMRPLLPPNDLWFAIDEVNRWLKGYPRLTITSEKIRKSAAKINANVASL
PDLAIQSGAKEPFTAFQQLHQKFKGNILFSVESEGRRETLLELLAPLGIKPKQISQISDE
IPPLALMISNLDQGFVIETSGQNLAIICETDLLGEKVQQKRSEKNRKTVNPDTLIRNLAE
LKIGQAVVHLENGVGRYGGLTVLDAGGMKAEYLVLHYANDAKLYVPVASLHLISRYIGGA
ETAPLHKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQTGFAFAYDKAEFDRFNATF
PYEETDDQKMAINAVISDMCQAKAMDRLVCGDVGFGKTEVAIRATFLAVMNHKQVAILAP
TTLLAQQHYENFKDRFANYPVNVEVLSRFKTAKEQKAILEKVTEGKVDILVGTHKLLQDD
VAFRDLGLLVIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNGMRDLSIIA
SPPARRLSIKTFVRQSDETVIREAILREILRGGQVYYLHNDVATIENCAEKLSQLVPEAR
VVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIIIERADKFGLAQLH
QLRGRVGRSHHQAYAYMLTPHPKTLTKDAEQRLEAMSTIDNLGAGFALATHDLEIRGAGE
LLGSEQSGQIESIGFSLYMDLLENAVKALQEGREPSLDEITQNQVEIELRVPALIPDDYL
PDVNMRLSFYKRIASSESLDQLKDLKIELIDRFGLLPDATKKLFAITQLRLAAQPLGLKK
IDAGIHGGYLEFKPTAQPDPMKFIQLIQKQPAVYSFEGAVKFKFRLPLEENHKRLEFVEN
LLNDIVAE

NT seq 3447 nt +upstreamnt +downstreamnt
atgtctctaattttacttaatctgccgcaaaccggcggcaattttcaagatcatcaaacc
ctcggcaaccttgtcgggcattcggatattttggcaattagccaagccgctcaacagttt
aacggcttgaccgttgttgtcacccccgacacccgcacggcgttacggttggaacaatcg
ctgtcgcaatttgccaatctgccggtgcaacttttccccgactgggaaaccttgccctac
gataatttctcaccgcatcaggacatcatctccgcccgtctttctgccctgtttgaacta
caacaaggacgtaagcagatttttctgttgccaatcaacactttaatgcagaaagtctgt
ccgccgagttatcttgccaacaacgtgttgctgattaaaaaaggcgaccgtttttcaatt
caaaacctgcgtttgcagttggaaaatgccggctatcgggcggtggatcaggtgttggaa
tatggcgaatatgcggtgcgtggggcaattctagacttgtacccaatgggcgcagacgag
ccgttccgcttggatttttttgatgatgaaatcgacacaatccgcacctttgatgtggat
agccaacgcactaaggcggaaattgatgaaatcaatctacttccagcccacgagttcccg
acagatagcaacgggatcgagcattttcgtagcaaattccgtgaaacattcggcgaaatc
cgccgtgagccggagcatatttatcagcaggtcagcaagggggttttgaacgcagggatt
gagtattggcagccattgttttttgcggaaatggcaagcctatttgactacttgccgaca
aatacgctatttgtgacttactccgatattcaacaaaaagccgagcaatttcaaaaagat
acgcaaaaccgttttgagagccgccgagttgatccgatgcgtccgctgctgccaccaaat
gatctctggtttgcgattgatgaagtgaatcgctggctgaaaggctatccgagactgacg
ataacttcggagaaaatccgtaaatcggcagcgaaaatcaatgcaaatgtggcgagtttg
cccgatcttgccattcaatcaggagcgaaagaaccatttacagcgttccagcagctccac
cagaaattcaagggcaatattctgttttcagtggagagcgaagggcgacgggaaacgttg
ttggaactgctagcaccgttggggatcaaaccaaaacaaatttcgcaaatttctgacgaa
attccaccgcttgcattgatgatttccaatttggatcagggttttgtgattgaaacaagc
ggtcagaatttagcaataatttgcgaaaccgatctccttggcgaaaaagtccaacaaaaa
cgcagcgaaaaaaaccgtaaaaccgtcaatcccgatacgctgatccgcaacttggcggag
ctgaaaatcgggcaagcggtggtgcatttggaaaacggtgtcggtcgctacggcggtttg
accgtgttggacgcaggcggaatgaaagccgaatacttggtgttgcattacgccaacgat
gccaagctctatgtgccggtggcatcgctccacttaatcagccgttatatcggcggagcg
gaaaccgctccgttgcacaaattaggcagtgaagcgtgggcgaaaacccgtcaaaaagcg
gcggagaaaatccgtgatgtggcggcggagttgcttgatgtgtacgctaaacgagaaagc
caaaccggttttgcctttgcctacgacaaggcggagttcgaccgtttcaatgctactttc
ccttacgaggaaacggacgatcagaaaatggcgatcaacgccgttatcagcgatatgtgc
caagccaaagcgatggacaggttggtatgtggcgatgtcggtttcggcaaaactgaagtg
gcaatccgggcgactttccttgcggtgatgaaccataaacaggtcgccattctcgcccca
accacgctacttgctcaacaacattacgagaattttaaagaccgttttgccaattatccg
gtgaacgtggaagtgctttcccgtttcaaaaccgccaaagagcagaaagcgattttggaa
aaagtcaccgaaggcaaggtcgatattttggtcggcacgcacaaactgttgcaggatgat
gtcgctttccgtgatcttggcttgctggtgattgacgaagaacaccgtttcggcgtgcgt
caaaaagagaaaatcaagcaactgcgagctaacgtggatattctcacgctcaccgccacg
ccaattccgagaacgctcaatatggcgttgaacggtatgcgtgatctctcaattattgcc
agcccaccggctcgccgcctgtcgatcaaaacctttgtgcgacaaagcgatgagacagtg
attcgagaggcaattttgcgtgaaatcttgcgtggcggacaggtttactacctgcataac
gatgtcgctaccattgaaaactgtgctgaaaaattgagccaacttgttcccgaagcccgt
gtggtgatcgggcatgggcagatgcgtgagcgtgaattggagcgggtgatgagcgatttt
tatcatcaacgctttaacttgctggtctgctcgaccattatcgaaaccggcattgacgtg
ccgactgccaacacgattatcatcgaacgggcggataaattcgggcttgcccagttgcac
caactgcgtgggcgtgtggggcgttcgcaccaccaagcctatgcctatatgctcacgccg
cacccgaaaacgctgaccaaagacgctgagcaacggctggaagcgatgagtaccatcgac
aatctcggagccggttttgccttggcgacccacgatttggaaatccgtggagcaggcgaa
ctgctaggcagcgagcagagcggacagatcgaaagtatcggcttttcgctctatatggac
ttgctcgaaaatgcggttaaagccttgcaggaagggcgtgagccaagtctcgacgaaatc
acccaaaaccaagtggagattgagctgcgagtgcctgccctcattccggacgactatttg
cctgatgtgaatatgcgactgtcgttctacaaacggatcgcaagttcggaaagcctagac
cagctcaaagatctcaaaatcgagctgatcgaccgcttcggcttattgccggatgccacc
aaaaaactatttgcaattacccaactccgcctcgccgcccaaccgctcggattgaagaaa
attgatgcgggcatccacggcggctacttggagttcaaacccaccgcccaacctgacccg
atgaagtttattcagcttattcaaaaacaaccggcagtgtacagctttgaaggggcggtg
aaattcaagttcagattaccgctggaagaaaaccacaagcggttggaatttgtggagaat
ttgctaaacgatattgtggctgaatag

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (20)   

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