KEGG   Mycolicibacterium vaccae: MYVA_5286
Entry
MYVA_5286         CDS       T04356                                 
Symbol
topA
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
mvq  Mycolicibacterium vaccae
Brite
KEGG Orthology (KO) [BR:mvq00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mvq03032]
    MYVA_5286 (topA)
   03400 DNA repair and recombination proteins [BR:mvq03400]
    MYVA_5286 (topA)
Enzymes [BR:mvq01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     MYVA_5286 (topA)
DNA replication proteins [BR:mvq03032]
 Prokaryotic type
  DNA Topoisomerases
   MYVA_5286 (topA)
DNA repair and recombination proteins [BR:mvq03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      MYVA_5286 (topA)
SSDB
Motif
Pfam: Topoisom_bac Toprim_C_rpt Toprim Toprim_4 Rep_1B
Other DBs
NCBI-ProteinID: ANI42336
Position
complement(5513942..5516779)
AA seq 945 aa
MADEDRGSGKTGAEPRRGNGSTVRRLVIVESPTKARKIAGYLGSNYIVESSRGHIRDLPR
AAADVPAKYKSEPWARLGVNVDADFEPLYIISPDKKATVADLKDKLKNVDELYLATDGDR
EGEAIAWHLLETLKPRIPVKRMVFHEITEPAIRAAAADPRDLDNDLVDAQETRRILDRLY
GYEVSPVLWKKVAPKLSAGRVQSVATRIIVQRERERMAFRSAGYWDVTAELDASVSDAQA
SPPRFTAKLNTVDGRRVASGRDFDSLGALKKPDEVLVLDEAGANGLAAGLRGAQLAVTSV
EQKPYTRRPYAPFMTSTLQQEAGRKLRFSSERTMSIAQRLYENGYITYMRTDSTTLSQSA
IDAARNQARQLYGEEYVHPSPRQYTRKVKNAQEAHEAIRPAGDVFQTPGQLHSQLDTDEF
RLYELIWQRTVASQMADARGTTLSLRIGGTAAGGEQVVFNASGRTITFAGFLKAYVESLD
EQAGGEADDAESRLPNLTQGQRVDARDLTADGHTTSPPARYTEASLIKALEDLGIGRPST
YSSIIKTIQDRGYVHKKGSALVPSWVAFAVIGLLEQHFARLVDYDFTAAMEDELDAIAAG
NEQRTNWLNNFYFGGEHGVEGSIAREGGLKRLVGGNLEEIDAREVNSIKLFDDAEGRAIN
VRVGRNGAYLERMVEDPDNPGELKPQRANLKDELTPDELTLELAEKLFATPQEGRSLGVD
PESGHEIVAKDGRYGPYVTEVLPEPPDDGEAGATAKKGKKPTGPKPRTGSLFRSMDLETV
TLEDALKLLSLPRVVGVDPADNEEITAQNGRYGPYLKKGTDSRSLATEDQIFSITLDEAL
KIYAEPKRRGRQGAATPPLRELGVDPVSEKPMVIKDGRFGPYVTDGETNASLRKGDDVMT
ITDARASELLADRRARGPVKKKAAPKKVAKKAAKKAPAKKAAKKG
NT seq 2838 nt   +upstreamnt  +downstreamnt
gtggctgacgaggaccgcggcagcggcaaaactggcgccgaaccgcgcagaggcaacggt
tcgaccgtgcgacggctcgtcattgtcgagtcgcccaccaaggcgcgcaaaatcgcaggt
tatctggggtcgaactacatcgtcgagtcctcccgtgggcacatccgcgaccttcctcgt
gcggcggccgacgtccctgcgaagtacaagtcggagccgtgggcgcgcctgggcgtcaac
gtcgacgccgacttcgaaccgctctacatcatcagcccggacaagaaggccaccgtcgct
gatctgaaggacaagctcaagaacgtcgacgagctctatctggccaccgacggtgaccgc
gagggtgaggcgatcgcctggcacctgctggagacgctgaagccgcgcatcccggtcaag
cggatggtgttccacgagatcaccgaaccggcgatccgggcggccgcagcagacccccgc
gatctggacaacgacctggtcgacgcccaggagacccgccgcatcctcgaccgcctctac
ggctacgaggtcagccccgtgctgtggaagaaggtcgctccgaagctgtcggccggccgg
gtgcagtcggttgcgacgcgcatcatcgtccagcgcgaacgcgagcggatggcgttccgc
agcgccggctactgggacgtcaccgccgaactggacgccagcgtctccgacgcgcaggcg
tccccgccgaggttcaccgccaagctcaacacggtcgacgggcgccgggtggccagcggc
cgcgatttcgactccctcggcgcgctcaagaagcccgacgaggtgctcgttctcgacgag
gccggcgccaacggtctggctgccggcctgcgcggggcgcagctcgcggtcacctcggtg
gagcagaagccgtacacccgccgtccgtacgcgccgttcatgacctcgacgttgcagcag
gaggcgggccgcaagctgcggttctcgtcggagcgcacgatgagcatcgcgcagcggctg
tacgagaacggctacatcacctatatgcgtaccgactcgacgaccttgtcgcagtcggcc
attgacgccgcacgcaaccaggcccgccagctctacggcgaggagtacgtgcacccgtcg
ccgcgccagtacacccgcaaggtgaagaacgcgcaggaggcccacgaggccatccgcccg
gcaggcgacgtattccagacccccggccagctgcacagccagctcgacaccgacgagttc
cgcctctacgagctgatctggcagcgcaccgtcgcatcccagatggccgacgcgcgcggc
accacgctgagcctgcgtatcggcggcaccgcggcgggcggcgagcaggtggtgttcaat
gccagcggccgcacgatcacgttcgcgggcttcctcaaggcctacgtggagagcctcgac
gagcaggccggaggcgaggccgacgatgccgagagccggttgccgaacctgacccagggc
cagcgcgtcgacgccagggacctgaccgccgacggccacaccacctcgccgccggcgcgc
tacaccgaggcctcgctgatcaaagcgctggaggatctcgggatcgggcggccgtcgacg
tacagctcgatcatcaagacgatccaggaccgcggctacgtgcacaagaagggcagtgcg
ctggttccgtcctgggtggcgttcgccgtgatcgggttgctggagcagcatttcgcacgc
ctggtcgactacgacttcaccgccgcgatggaagacgagctggacgcgatcgccgcgggt
aatgagcaaaggaccaactggctcaacaacttctacttcggtggtgagcacggcgtcgaa
ggttcgatcgcccgcgagggcggcctcaagcggctggtgggcggcaacctcgaagagatc
gacgcacgagaagtcaactccatcaagcttttcgacgacgccgagggtcgcgcgatcaac
gtccgggtgggccgcaacggtgcctacctcgagcggatggtcgaagacccggacaacccg
ggcgagctgaagcctcagcgcgccaatctcaaagacgagctgacccccgacgagctgacc
ctggagctggccgaaaagcttttcgccacaccgcaggagggccggtcgctgggtgtcgac
ccggagtccgggcacgagatcgtcgccaaggacggccgctacggtccgtacgtcaccgag
gtgctgccggaacccccggacgacggtgaagccggcgcgaccgccaagaagggcaagaag
ccgacgggcccgaagccgcgcaccggttcgttgttccggtcgatggacctggagacggtg
acgctggaggatgcgctcaagctgctgtcgctgccgcgggtggtcggggtcgacccggcg
gacaacgaggagatcaccgcgcagaacggccgctacggcccgtacctgaagaagggcacc
gactcccggtcgctggccaccgaggaccagatcttctccatcacgctcgacgaggcgctc
aagatctacgccgagccgaaacgccgcgggcgtcagggcgcggccaccccgccgctgcgc
gagctgggcgtcgacccggtgtcggagaagccgatggtgatcaaggacggccgcttcggg
ccgtacgtcaccgacggggagaccaacgcgagcctgcgcaagggcgacgacgtcatgacg
atcaccgatgcgcgcgcgtccgagctgctggccgaccgccgtgcccgcggtccggtgaag
aagaaggccgccccgaagaaggtggccaagaaggctgccaagaaggccccggcgaagaag
gccgccaagaagggttag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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