KEGG   Methanocaldococcus vulcanius: Metvu_1206
Entry
Metvu_1206        CDS       T01105                                 
Name
(GenBank) AAA family ATPase, CDC48 subfamily
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
mvu  Methanocaldococcus vulcanius
Brite
KEGG Orthology (KO) [BR:mvu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mvu03019]
    Metvu_1206
   03009 Ribosome biogenesis [BR:mvu03009]
    Metvu_1206
   04131 Membrane trafficking [BR:mvu04131]
    Metvu_1206
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:mvu04147]
    Metvu_1206
Messenger RNA biogenesis [BR:mvu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     Metvu_1206
Ribosome biogenesis [BR:mvu03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    Metvu_1206
Membrane trafficking [BR:mvu04131]
 SNARE
  SNARE associated proteins
   Others
    Metvu_1206
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    Metvu_1206
Exosome [BR:mvu04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   Metvu_1206
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N CDC48_2 RuvB_N AAA_16 AAA_5 AAA_2 TIP49 AAA_14 AAA_33 AAA_22 Vps4_C AAA_28 nSTAND3 DUF815 AAA_18 IstB_IS21 Mg_chelatase Sigma54_activat RNA_helicase AAA_7 Zeta_toxin PhoH AAA_17 AAA_3 TsaE AAA_24 Sigma54_activ_2 Parvo_NS1 ATP-synt_ab bpMoxR AAA_30 SLFN-g3_helicase NB-ARC ResIII Baculo_PEP_C ATPase COG5_C Molydop_binding CorA Allexi_40kDa Glutaredoxin2_C DUF6674 DUF2383 DUF2203
Other DBs
NCBI-ProteinID: ACX73064
UniProt: C9RHL2
Position
1190419..1193130
AA seq 903 aa
MVKELKVAEAYQGDVGRGIARIDPYTMEELGLKPGDVIEIEGAKGKAYAIVYRGFLEDAG
KGIIRIDGYLRQNAGVAIGDKVKVKKVDIKEAKKVVLAPTQPIRFGPGFEDFVKRKIMGQ
VLSKGSKVTIGVLGTALTFVVVSTTPAGPVRVTEFTHVELKEEPVSEVKETKVPDVTYED
IGGLKEEVKKVREMIELPMRHPELFEKLGIEPPKGVLLVGPPGTGKTLLAKAVANEAGAN
FYVINGPEIMSKYVGETEENLRKIFEEAEENAPSIIFIDELDAIAPKRDEASGEVERRLV
AQLLTLMDGLKGRGQVVVIGATNRPNALDPALRRPGRFDREIVIGVPDREGRKEILQIHT
RNMPLAEDVDLDYLADVTHGFVGADLAALCKEAAMRALRRVLPSIDLEAEEIPKEVLDNL
KVTMDDFKEALKEVEPSAMREVLVEVPNIKWEDIGGLEDVKQELREAVEWPLKAKEVFEK
IGVRPPKGVLLFGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRK
ARQSAPCIIFFDEIDAIAPKRGRDLSSAVTDKVVNQLLTELDGMEEPKDVIVIAATNRPD
IIDSALLRPGRLDRVILVPVPDEKARLDILKIHTRSMNLDEDVNLEELAKKTEGYTGADI
EALCREAAMLAVREGIGKPWEIEVKLRDLINYLQSISGTFRGAAVELNSIIKATKERETA
ESGEFSELKNAIGRIISVLAPAKEKIEAVEKEVDNFLEIINKEELKPSEKDEAQKLAKYL
KDILNKLKEMIDNIYELENKLNTLKDQVSAEEIDEIIKTTQNILQRFTTSLDELKNILKD
IESIRLKVSTKDVKIKKEHFLKALEKIKPSVSKEDMRIYEKLAQEYGRSTSTEKKKEENK
EVI
NT seq 2712 nt   +upstreamnt  +downstreamnt
atggttaaggaattaaaagttgccgaagcatatcaaggagatgtaggaagaggaattgcg
agaatagacccatacacaatggaagaacttggtttaaaaccaggagatgttatcgaaatt
gaaggggctaagggaaaggcctatgctattgtttataggggcttcttagaagatgctggg
aaaggaatcataaggattgatggttatttaagacaaaatgctggagtggcaataggagat
aaagtaaaagttaaaaaagtagatataaaagaagcaaagaaagttgtattagccccaact
caaccaattagattcggacctggatttgaggacttcgtcaagagaaagataatggggcaa
gttttaagcaaaggttcaaaagtcactattggggtcttaggaactgctttaacatttgta
gttgttagcacaacaccagcaggccctgttagagtaacggaattcacacacgttgagtta
aaagaagaaccagttagcgaagttaaagaaaccaaagttccagacgttacctatgaagat
attggtggtttgaaagaggaggttaagaaagttagagaaatgatagaactaccaatgaga
cacccagagttgttcgaaaagttgggaattgaaccaccaaaaggagttttattagtggga
ccaccaggaactggtaaaacattattagctaaggcagtagctaacgaagcaggagcaaac
ttctatgttataaacggcccagagataatgagtaaatatgttggagaaacagaagaaaat
ctaagaaaaatatttgaagaggcagaagagaacgctccttcaatcatattcatagacgaa
cttgatgctatcgctccaaagagagatgaggcctctggagaagttgaaagaagattagtt
gctcaactcttaaccttaatggatggattgaaaggaagaggacaagttgttgttattggt
gcaacaaacagaccaaacgcattagaccctgcattaagaagacctggaagatttgataga
gagattgttatcggagtgccagacagagaaggaagaaaagagatcttacaaatacacaca
agaaacatgccattagcagaggacgttgacctcgattatttagctgatgtaacccacgga
ttcgttggggctgatttagcagctttatgtaaagaggcagcaatgagagctttaagaagg
gtcttaccaagcattgacttagaggcagaagaaattccaaaagaggttttggataactta
aaagttacaatggatgacttcaaagaggcattgaaagaagttgagccatcagcaatgagg
gaagttttagttgaagttccaaatatcaaatgggaggatattggtggcttagaagatgtt
aaacaggaattaagagaggcagtcgaatggccattgaaggcaaaagaggtctttgagaaa
attggtgtaagacctccaaaaggtgtattgttgtttggaccaccaggaacaggtaagacg
ttattggctaaggcagtagctaacgaaagcggagcaaacttcataagcgttaaggggcca
gagatatttagtaagtgggtaggggaaagtgagaaggcaataagagagatattcagaaag
gcaagacagtcagcaccctgtataatattcttcgatgagattgatgctattgctccaaag
agaggaagagatttaagttcagcagttactgataaagttgtcaaccagctattaactgaa
ttggatggaatggaggaaccaaaggatgttatagttattgcagcaactaacagacctgat
ataatcgattcagctctactaagacctggaagattagatagagttatattagttccagtt
ccagacgagaaagcaagattagatatattgaagatacacacaagaagcatgaatttagat
gaggatgttaacttagaagagttggctaaaaagacggagggttatacaggagctgatatt
gaagcgttatgtagagaggcagcaatgttggcagttagagagggaataggaaaaccatgg
gagatcgaagtaaaacttagagatttaattaactacttgcagagtatttcaggaacattt
agaggagcagcagtggaacttaacagcataataaaagctactaaggaaagagaaacagca
gagtcaggagaattcagcgaattgaagaatgccataggaagaattataagtgtcttagca
cctgctaaggagaagattgaagcagtagagaaggaagttgataacttcttagagattata
aacaaggaagagttaaagccatctgaaaaagacgaagctcagaaattggctaaatacttg
aaagatattcttaataagttaaaagaaatgatagacaacatttacgagttggagaacaag
ttaaatactttgaaagatcaagtatcagctgaagagatcgatgagatcataaaaacaaca
cagaatatcctacaaagattcactacatccttagatgagctcaaaaacatattaaaagat
attgaaagtataagattaaaggtttcaacaaaagatgtcaaaatcaagaaagaacacttc
ttaaaagcccttgaaaagataaagccatctgtaagtaaagaagatatgagaatctatgaa
aagttagctcaagagtatggaagatctacatcaacagaaaagaaaaaagaggagaataaa
gaagtgatctaa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (46)   
   Pfam (46)   
All databases (56)   

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