KEGG   Myxococcus xanthus: MXAN_5637
Entry
MXAN_5637         CDS       T00366                                 
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
mxa  Myxococcus xanthus
Pathway
mxa03030  DNA replication
mxa03410  Base excision repair
mxa03420  Nucleotide excision repair
mxa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mxa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MXAN_5637 (ligA)
   03410 Base excision repair
    MXAN_5637 (ligA)
   03420 Nucleotide excision repair
    MXAN_5637 (ligA)
   03430 Mismatch repair
    MXAN_5637 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mxa03032]
    MXAN_5637 (ligA)
   03400 DNA repair and recombination proteins [BR:mxa03400]
    MXAN_5637 (ligA)
Enzymes [BR:mxa01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     MXAN_5637 (ligA)
DNA replication proteins [BR:mxa03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     MXAN_5637 (ligA)
DNA repair and recombination proteins [BR:mxa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     MXAN_5637 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     MXAN_5637 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     MXAN_5637 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      MXAN_5637 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT HHH RNA_pol_A_CTD BRCT_2
Other DBs
NCBI-ProteinID: ABF88435
UniProt: Q1D0P7
Position
7002285..7004303
AA seq 672 aa
MDDFQKAAARARELHRELAHHNYRYYVLDSPEVSDAQYDKLMRELQDLEAKHPSLQTPDS
PTQRVGGAAAEEFGEVVHRAPMISLANIFEDQGLTEFDERIRKLVGLPGIAYVCEPKLDG
LAIALRYEKGAFVQGATRGDGTTGEDVTSNLRTIRSLPMSLFPQDDVKVPDVLEVRGEVF
IRKKDFQKLNEKREEEGEPLFANPRNAAAGSLRQLDPRMTAARPLSVFLYECVPGEGVPV
FKTHIEKLEYLKTLGLPINQYRRAEGLEGVRQAYDASLKGRHELPFEVDGMVVKVDDEDQ
RKRLGQVSKSPRWAVAYKFPPEEESTEVMDIGIQVGRTGALTPVAHLKPVKVGGVTVARA
TLHNEDELRRKDVRKGDTVFVRRAGDVIPEIVSVVLSKRPADSAPFEFPKHCPVCDAVAT
KDEDGAIIRCTGASCPAQLVEKIRHFASRLAMDIEGLGDKLAAQLVSTGRVKAFADLYAL
TKEDLLTLERMGDKSADNLIASLERSKQTTQRRFLYSLGIRHVGDATAKALAEAFPRSEM
LFEASLEDISRVKDVGPIMAQVIHTFFQEPQNQEAIRALLAAGVQPAAPQVATGGPFVGK
SVVLTGAMTGMTREQAKEEVERRGGKVAGSVSRKTDFVVAGEDAGSKLKKAQELGVRILD
EQAFLQMLQTNA
NT seq 2019 nt   +upstreamnt  +downstreamnt
gtggacgacttccagaaagccgcagcccgagcccgtgagctccaccgtgagctggcgcac
cacaactaccgttactacgtcctcgactcgcccgaggtcagcgacgcgcaatacgacaag
ctgatgcgcgagctgcaggacctggaggcgaagcacccgagcctccagacgccggactcg
cccacccagcgcgtgggcggcgcggcggccgaggagtttggcgaggtggtgcaccgggcg
cccatgatctcgctggccaacatcttcgaggaccagggcctcactgagttcgacgagcgc
atccgcaagctggtgggcctgccgggcatcgcctacgtctgcgagcccaagctggacgga
ctcgccatcgcgttgcgttacgaaaagggcgcgttcgtccagggcgccacccggggcgac
ggcaccactggcgaggacgtcacctcgaacctgcgcaccatccgaagcctgcccatgtcg
ctgttcccccaggacgacgtgaaggtgccggacgtgctggaggtccgcggtgaggtcttc
atccgcaagaaggacttccagaagctcaacgagaagcgcgaggaggaaggcgagccgctc
ttcgccaacccgcgcaacgccgccgccggcagcctgcgccagttggacccgcggatgacg
gccgcccggcccctctccgtgttcctctacgaatgcgtcccgggcgaaggcgtgcccgtc
ttcaagacgcacatcgagaagctggagtacctcaagacgctgggcctgcccatcaaccag
taccgccgcgccgagggcctggagggcgtgcgccaggcctatgacgcctccctcaagggc
cgccacgagctgcccttcgaagtggacggcatggtggtgaaggtggatgacgaggaccag
cgcaagcgcctgggccaggtctccaagagcccccgctgggcggtggcttacaagttccct
ccggaggaggagtccacggaggtgatggacatcggcatccaggtgggccgcacgggcgcg
ctgacgccggtggcacacctcaagccggtgaaggtgggcggcgtcacggtggcgcgcgcc
acgctgcacaacgaggacgagctgcgccgcaaggacgtgcgcaagggcgacaccgtcttc
gtgcgccgcgccggtgacgtgattccggaaatcgtctccgtggtgctgtccaagcgcccc
gcggactccgcgcccttcgagttccccaagcactgtcctgtctgcgatgcggtggcgacc
aaggacgaggacggcgccatcatccgctgcacgggcgcttcctgccccgcacaactggtg
gagaagatccgccacttcgccagccgcctggccatggacatcgaagggctgggcgacaag
ctggccgcgcagttggtgtccaccggcagggtgaaggcgttcgcggacctctacgcgctc
accaaggaggacctgctgacgctggagcgcatgggcgacaagagcgcggacaacctcatc
gcgtcactggagcgctccaagcagaccacacagcgccgcttcctctattccctgggcatc
cgccacgtgggtgacgccaccgccaaggcgctggcggaggccttcccccggtcagagatg
ctcttcgaggccagcctggaggacatctcccgcgtaaaggacgtaggccccatcatggcc
caggtcatccacaccttcttccaggagccccagaatcaggaggccatccgcgcgctcctg
gcggcgggggtccagcccgcggcgccccaggtcgccacgggaggccccttcgtgggcaag
tcggtggtgctcaccggcgcgatgacgggtatgacgcgggagcaggccaaggaagaggtc
gagcgccggggcggcaaggtcgccggaagtgtctcgcgcaagaccgatttcgtcgtggcc
ggtgaggatgcgggcagcaaactgaagaaggcccaggaactcggggtaagaatcctggac
gagcaggcgttcctgcagatgctgcagacgaacgcctag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (10)   
   Pfam (10)   
All databases (40)   

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