KEGG   Mizuhopecten yessoensis (Yesso scallop): 110460800
Entry
110460800         CDS       T05079                                 
Name
(RefSeq) spliceosome RNA helicase DDX39B
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
myi  Mizuhopecten yessoensis (Yesso scallop)
Pathway
myi03013  Nucleocytoplasmic transport
myi03015  mRNA surveillance pathway
myi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:myi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110460800
  09122 Translation
   03013 Nucleocytoplasmic transport
    110460800
   03015 mRNA surveillance pathway
    110460800
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:myi03019]
    110460800
   03041 Spliceosome [BR:myi03041]
    110460800
Enzymes [BR:myi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     110460800
Messenger RNA biogenesis [BR:myi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     110460800
Spliceosome [BR:myi03041]
 Complex C
  Other components
   EJC/TREX
    110460800
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    110460800
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 Cas9_PI AAA_19 P-loop_SecA
Other DBs
NCBI-GeneID: 110460800
NCBI-ProteinID: XP_021369631
Position
Unknown
AA seq 428 aa
MADNENEAELLDYEEEENEATADGAGDVQQQIKKDVKGTYVSIHSSGFRDFLLKPELLRA
IVDCGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVL
AHTRELAFQISKEYERFSKYMTSTKIAVFFGGMSIKKDEEVLKKNCPHIVVGTPGRILAL
VRTKQLILKHAKHFILDECDKMLEELDMRRDVQEIFRATPHEKQVMMFSATLSKDVRLIC
KKFMQDPMEVYVDDDSKLTLHGLQQHYVKLKDNEKNRKLFELLDVLEFNQVIIFVKSVQR
CMALAQLLVEQNFPAIAIHRAMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIV
FNYDMPENSDTYLHRVARAGRFGTKGLAITFVSDENDAKVLNDVQERFEVNITELPDEID
ISSYIEGR
NT seq 1287 nt   +upstreamnt  +downstreamnt
atggcagacaacgaaaatgaagctgaacttttggactacgaagaggaagagaatgaagct
accgctgatggagcaggggatgtccagcaacaaataaagaaagacgttaagggaacatat
gtgtccatccacagttctggattcagagattttcttctgaaaccagagttgctgagggcc
attgttgactgtggttttgagcatccttcagaggttcagcacgagtgcattcctcaagca
attttgtctatggatgtgttatgccaagcgaagtctggtatgggaaagactgctgtgttt
gtactggcgacacttcagcagctggagcctgtggacgggcaggtgtctgtgttggttttg
gcacacactagggaactggctttccagatcagcaaggagtatgagcgtttcagcaagtac
atgaccagcacaaagatagctgttttcttcggtggaatgtccattaagaaagacgaagag
gtcctaaaaaagaactgcccacatattgtagtgggaaccccagggaggatcctagcactt
gtacggacaaaacaactcatcctgaagcatgccaagcatttcattttagacgaatgtgac
aaaatgttggaagaacttgacatgaggagagatgtccaggagatattcagagcaaccccc
catgagaagcaggtcatgatgttcagtgccaccctcagcaaagatgtcagattaatctgc
aagaagtttatgcaagatcctatggaagtgtatgtggatgatgactccaagctcaccctt
catggtctgcagcagcactatgtcaaactgaaggacaacgaaaagaaccgaaagctattt
gagcttcttgatgttcttgaatttaaccaggtgatcatcttcgtaaagtccgtccagaga
tgtatggccctggcacagttgttggtggagcagaacttccccgctatcgccatccataga
gccatgacacaggaggaaagattatctcgttatcagcagtttaaggatttccagaaaaga
atcctggtagccacaaacttgtttggacgaggaatggatattgagagagtaaacattgtg
tttaactacgacatgcccgagaattctgacacatatctacacagagtggcacgtgcagga
aggtttggtaccaaaggtcttgccatcacatttgtctctgatgagaatgatgccaaggtg
ttgaatgatgttcaggagcgatttgaggtcaacatcacagaactaccagatgagattgac
atctcatcatacattgagggtcggtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (194)   
   KEGG ORTHOLOGY (1)   
   RefGene (190)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (211)   

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